Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g193 ATGGAGAGAAGCTCAAGTCCTGAATCAAAACCCCACCTCCACCCACTAAATAATGGGTGTCTTGGCCTTGATTTGAGTTGGGCATCTCCTTTGATTTCTGCAATGGTGATGCTGGAATTCACTCCAATGACTTTCCTCAAGTGGGCATTGTTGGCTTGTCTTGTTTGTTCCTCTTTAAGCCTTCAAATTCCAAACCTAACCCAATCCTGTGATCCAAATGATTTGCGTGCACTGAAGGAATTTGCAGGAAACCTCACCAATGGGTCAATTTTCTTCCTTTGGTCCAATGATTCTCACTGCTGTAGATGGGATGGTGTTGCTTTGGGTCGTTTAGATCATTTGAAATTCCTTGATCTTTCAAGCAATCAACTAGATGGTGAATTACCCATGGAGCTCTCAAATCTGCATCAGCTGGAAATGATTGATTTGTCAATGAACCATTTCACAGGGGGGCTTGAAGGCTTAGGCAACTGCAGCTTTACATCTCTCCAGAACCTGCATGTGGATTACAATTCTCTTTCAGGCCAGCTTCCAGAGTTTTTGTTTTCATTGCCATCTTTGGAGCAGCTCTCGATCCCCGGCAACAATTTCTCCGGCCATTTAAGCAGAAAATTGAGTAAGCTCCACAGCCTTAAAGCCTTGGTTATATTTGGAAACCGATTCAGGGGTCCAATTCCGAATGTATTTGGGAACCTTACACAACTGGAAATATTAATTGCACACTCAAATTCATTCTATGGGAATGATTTACGAGGCCCGGTCCCTGAAAGTTTTGCAAACCTCAAATACCTTTCGAAGTTGCAAGTCCTTGATTTGTCGTGGAATCACTTGGATGGGAGTATCCCTCCTTGGATTGGTGAAATGGAGAATTTGTTTTACTTGGACTTCTCTAATAACTCGCTCACAGGACGAATACCGAAAAGCTTGACGGAGCTGAAGAGCCTTATCTTCACAAAATGTAACTCGTCAAATATTACTACTTCTGCAGGCATTCCACTATATGTGAAGCGAAACCAGAGTGCAAATGGTTTGCAATACAACCAGGTCTCAAGTTTCCCTCCATCAATATTCCTGAGCAATAACAGAATTAATGGGACAATTTGGCCTGAAATTGGGAAACTTAAACAGCTCCACGTCTTAGATTTGAGCAGAAACAACATTACAGGTACCATCCCTGACTCCATTTCGAACATGGGAAATTTGGAAGTTCTGGATTTATCATGCAATGACCTGCATGGGGAGATCCCTTCATCATTGAACAAGCTCACTTTCCTATCAAAGTTCAGTGTGGCTGACAATCAGTTGCGTGGAATGATTCCCACTGGGGGGCAGTTCCTAAGCTTTCCCAACTCGAGCTTTGAGGGTAACCCTGGCCTCTGTGGAGAAGTGTATATTCCTTATGTGGGGGATCCAATCGTTGATCTGGATGAGGAAATCAGCCGGCCACACAGGCTATCTGAAGTGCTTGGGTCTTCAAAGCTGGTCCTGTTTCAGAATTCAGGTTGCAAGGATCTCTCAGTAGCAGACTTGTTGAAGTCAACAAACAATTTCAACCAAGCAAATATAATTGGTTGTGGTGGATTTGGTCTGGTTTACAAAGCCAATCTTCCTGATGGCACAAGGGCTGCAATCAAGAGGCTTTCTGGGGATTGCGGGCAGATGGAGCGCGAGTTTCGAGCTGAAGTGGAAGCCCTCTCAAGAGCTCAGCATAAGAATCTTGTTTCTCTTCAAGGGTATTGCCGGCATGGTAATGATAGATTGTTAATTTACTCCTACATGGAGAATGGAAGCTTGGACTATTGGCTGCATGAAAGAGTTGATGGAGGTTCATTTCTTACATGGGACACAAGAGTCAAGATTGCTCAAGGAGCAGGTCGGGGATTAGCTTACTTGCACAAGGTTTGTGAGCCAAGTGTAGTTCATCGAGACATTAAATCTAGCAACATTCTTTTGGATGAAACATTTGAAGCTCATTTAGCAGATTTTGGTCTCTCAAGGCTACTTCGGCCTTATGATACTCATGTAACAACGGATTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATATAGTCAGACATTAACAGCAACCTTCAAAGGTGATGTTTACAGCTTTGGTGTTGTTCTTCTCGAGCTTCTTACTGGTAGGAGGCCTGTGGAAGTATGCAAAGGAAAAAATTGTAGGGACTTGGTGTCATGGGTGTTTCAGATGAAATCAGAGAAGAAAGAGGAGCAGATTATGGATTCATCGGTTTGGGATAAGGATCGTGAGAAGCAGTTCTTAGAAGTGCTTGGTATTGCCTGTAGATGTATAGACCAAGATCCAAGGCAGAGACCCTCAATCGATCAAGTTGTCTCATGGCTTGATGCTGTTGGAAAGGAGGGCGTCCTTCCATTGTTTATAGCATTTGAAATTAGCTCATTTTCTTTCTTCCTTTCTTAG 2442 43.28 MERSSSPESKPHLHPLNNGCLGLDLSWASPLISAMVMLEFTPMTFLKWALLACLVCSSLSLQIPNLTQSCDPNDLRALKEFAGNLTNGSIFFLWSNDSHCCRWDGVALGRLDHLKFLDLSSNQLDGELPMELSNLHQLEMIDLSMNHFTGGLEGLGNCSFTSLQNLHVDYNSLSGQLPEFLFSLPSLEQLSIPGNNFSGHLSRKLSKLHSLKALVIFGNRFRGPIPNVFGNLTQLEILIAHSNSFYGNDLRGPVPESFANLKYLSKLQVLDLSWNHLDGSIPPWIGEMENLFYLDFSNNSLTGRIPKSLTELKSLIFTKCNSSNITTSAGIPLYVKRNQSANGLQYNQVSSFPPSIFLSNNRINGTIWPEIGKLKQLHVLDLSRNNITGTIPDSISNMGNLEVLDLSCNDLHGEIPSSLNKLTFLSKFSVADNQLRGMIPTGGQFLSFPNSSFEGNPGLCGEVYIPYVGDPIVDLDEEISRPHRLSEVLGSSKLVLFQNSGCKDLSVADLLKSTNNFNQANIIGCGGFGLVYKANLPDGTRAAIKRLSGDCGQMEREFRAEVEALSRAQHKNLVSLQGYCRHGNDRLLIYSYMENGSLDYWLHERVDGGSFLTWDTRVKIAQGAGRGLAYLHKVCEPSVVHRDIKSSNILLDETFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATFKGDVYSFGVVLLELLTGRRPVEVCKGKNCRDLVSWVFQMKSEKKEEQIMDSSVWDKDREKQFLEVLGIACRCIDQDPRQRPSIDQVVSWLDAVGKEGVLPLFIAFEISSFSFFLS* 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2494738 2499659 - Vvi19g193 Vvi19g193 781692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g193 813 SUPERFAMILY L domain-like 109 460 - -
Vvi19g193 813 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Vvi19g193 813 PANTHER RECEPTOR-LIKE PROTEIN 55 108 179 - -
Vvi19g193 813 PANTHER RECEPTOR-LIKE PROTEIN 55 472 796 - -
Vvi19g193 813 PANTHER RECEPTOR-LIKE PROTEIN 55 188 245 - -
Vvi19g193 813 PANTHER RECEPTOR-LIKE PROTEIN 55 249 463 - -
Vvi19g193 813 PANTHER RECEPTOR-LIKE PROTEIN 55 55 106 - -
Vvi19g193 813 Gene3D Ribonuclease Inhibitor 107 466 IPR032675 -
Vvi19g193 813 Pfam Protein kinase domain 518 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g193 813 Pfam Leucine rich repeat N-terminal domain 72 106 IPR013210 -
Vvi19g193 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Vvi19g193 813 Gene3D Phosphorylase Kinase; domain 1 483 592 - -
Vvi19g193 813 SUPERFAMILY Protein kinase-like (PK-like) 500 788 IPR011009 -
Vvi19g193 813 Pfam Leucine Rich Repeat 266 285 IPR001611 GO:0005515
Vvi19g193 813 SMART LRR_typ_2 111 135 IPR003591 -
Vvi19g193 813 SMART LRR_typ_2 264 288 IPR003591 -
Vvi19g193 813 SMART LRR_typ_2 374 397 IPR003591 -
Vvi19g193 813 SMART LRR_typ_2 160 184 IPR003591 -
Vvi19g193 813 SMART LRR_typ_2 398 422 IPR003591 -
Vvi19g193 813 Gene3D Transferase(Phosphotransferase) domain 1 593 794 - -
Vvi19g193 813 PRINTS Leucine-rich repeat signature 114 127 - -
Vvi19g193 813 PRINTS Leucine-rich repeat signature 264 277 - -
Vvi19g193 813 PANTHER BNAA02G10040D PROTEIN 55 106 - -
Vvi19g193 813 PANTHER BNAA02G10040D PROTEIN 249 463 - -
Vvi19g193 813 PANTHER BNAA02G10040D PROTEIN 108 179 - -
Vvi19g193 813 PANTHER BNAA02G10040D PROTEIN 472 796 - -
Vvi19g193 813 PANTHER BNAA02G10040D PROTEIN 188 245 - -
Vvi19g193 813 CDD STKc_IRAK 523 789 - -
Vvi19g193 813 ProSiteProfiles Protein kinase domain profile. 517 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g193 813 SMART serkin_6 517 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g193 813 Pfam Leucine rich repeat 376 435 IPR001611 GO:0005515
Vvi19g193 813 Pfam Leucine Rich repeat 113 127 IPR001611 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76416 PF00069 Pkinase 8.60E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g193 - - vvi:100260504 1102.81