Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g199 ATGCGGTGGTGGCTGGTTTTTGCTGGGTTTTTGTGCTGCTGTGAAGGGTTTAAGTTCATCGTCGGTGGAAAGGGTGGGTGGGTGGAGAACCCTTCTGAGGAGTATAATCAGTGGGCGGGGAGGAACAGGTTTCAAGTGAATGACACTCTCTTTTTTAAGTATCAGAAGGGGGTGGGGTCTGTGTTGGTGGTGGAGAAAGATGACTACTTCAGTTGTAATACAGAGAACCACAACCCCACCTTCACCTTCGACGTCTACTCCCGCCACCCCACCTTCATCTTCGACCTCTACTCCGGCCGCCGTCATTTCACCGGCACCGACACGGTCATCGGCAACTGTTATTGCACCGTCAACGGTTACCTTGTCATCCGTGGTTATTACAATACTGATTATTGCTTTAGGCCGCTTGTTTTAACATTCATTTCTTTAATTTCTTTTTTTATAAATGCATTTTATTTTATTTTATTTTATTTTTCAATAATTCTAATTTTATCATGGGATGATGGTGAGATGTTTGATTGA 522 43.87 MRWWLVFAGFLCCCEGFKFIVGGKGGWVENPSEEYNQWAGRNRFQVNDTLFFKYQKGVGSVLVVEKDDYFSCNTENHNPTFTFDVYSRHPTFIFDLYSGRRHFTGTDTVIGNCYCTVNGYLVIRGYYNTDYCFRPLVLTFISLISFFINAFYFILFYFSIILILSWDDGEMFD* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2541539 2543028 + Vvi19g199 Vvi19g199 781698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g199 173 Pfam Plastocyanin-like domain 27 114 IPR003245 GO:0009055
Vvi19g199 173 ProSiteProfiles Phytocyanin domain profile. 17 125 IPR003245 GO:0009055
Vvi19g199 173 Gene3D - 17 121 IPR008972 -
Vvi19g199 173 PANTHER EARLY NODULIN-LIKE PROTEIN 2 6 76 - -
Vvi19g199 173 SUPERFAMILY Cupredoxins 16 106 IPR008972 -
Vvi19g199 173 PANTHER BLUE COPPER PROTEIN 6 76 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g199 - - - vvi:100247026 170.244
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g283 Vvi19g199 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g199 . . . Bda09g00514 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0153 Cone9ag0178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069473 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1