Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g2 ATGGAAGTATCATCATCATCGTTGTCATCCTCCTCACCCCTATCAGTTCACTGGAGAAGGGATTTCTCCCCACTACTTGGTCGAGTTTCTCTCGACTGCCATGGCAGCCGCAAGCTCCCAAATCGCCCTTTCTCTTCTTCCACTTGTTCTTGCTTTGGAATTTCAATCTCCCAGCGGCCCCATTCCCATTCCTTTGTGTTCAGAAAATCCTCTCCACGCATTTCCGCAGTCTTTGAGCGCTTCACTGAACGAGCCATTAAGGCTGTCATCTTTTCCCAAAGAGAAGCGAAAGCTTTGGGCAGGAATATGGTATTCACCCAGCATCTTTTATTGGGTTTGGTCGCTGAGGATCGTAGTCTCGATGGCTTTCTTGGATCTGGCATCACCATAGACGATGCACGCGATGCTGTTCGCAGCATTTGGCATGATTATAACGACAGCAGCATCATTTCTGGAATTCCCAGTTCCCAAACCTCTGTTGCCTCCTCCACTGACGTCCCCTTTTCCATTAGCACAAAGCGAGTGTTTGAAGCCGCAATTGAGTACTCTAGGACTATGGGTTATAATTTCATTGCTCCCGAGCATATCGCTATTGGGTTATTTACAGTTGATGACGGCAGTGCTGGTCGTGTCCTCAAGAGATTGGGGGCAAATGTTAATCACTTGGCAGCTGTGGCAGTCTCCAGGCTTCAAGGAGAGCTTGCCAAAGATGGTAGTGAACCATCTGCTACATTCAAAGGGATGCAGGGAAAATCTTTTTCTGGAAAAGCAGCCATTGTGAAATCCTCAGGAAAAAAGAAGGAGAAAAGTGCTCTGGCTCAATTCTGTGTAGACCTTACTGCTCGTGCTACTGATGGACTCATTGATCCTGTAATTGGCCGAGACATGGAAGTTCAGAGGGTTGTCCAAATACTTTGCCGAAGAACTAAAAATAACCCCATTCTTCTAGGTGAAAGCGGGGTTGGGAAAACAGCTATTGCTGAAGGATTGGCAATTAGTATTGCAGAGGCAGATGTTCCCTCTTTTCTCTTGACAAAACGCATAATGTCCTTGGATATAGGTCTATTAATGGCAGGCACAAAGGAGAGGGGAGAATTAGAGGCACGTGTTACTACTTTAATAAGTGATATTTTGAAATCAGGTAATATCATTCTTTTCATTGATGAAGTCCACATGCTTGTTGGGTCTGGCATTGCTGGACGAGGAAACAAGGGGTCAGGTCTAGACATTGCTAGTCTATTGAAGCCCTCTCTTGGGAGGGGACAGTTACAGTGTTTTGCATCCACTACCATAGATGAGTACGTGAAACTTTTTGAGAAGGATAAAGCATTAGCAAGAAGATTCCAACCTGTGTTGATCAATGAGCCAAGCCAGGAGGAAGCTGTTAGGATACTGTTGGGCCTGCGGGAGAAATATGAGGCCCATCACAAATGCAGATTCACATTGGAGGCCATAAATGCTGCTGTGCACCTATCAGCAAGATATATTCCTGATAGGCGTCTTCCTGATAAAGCAATTGATCTTATTGATGAGGCAGGAAGTAAAGCTCGTATGGAAGCATACAAGAGGAAGAAGGAAAAGCAAACTTCTGTGCTTTTAAAATCACCAGATGATTATTGGCAAGAAATTAGGGCTGTTAAGGCCATGCATGAAATGGTCATGGCTAGTAAACTGAAAAATTGTAATGGTGCTTCTTGCATGGAAGATGGTAGCACTGTCCTTTTTGAATCCCCTTTGCCTTCAATGTCAGATGATAATGAACCTATAGTGGTGGGACCCAATGAAATAGCAGTAGTTGCATCACTCTGGTCAGGGATACCAGTTCAGCAGATCACTGCTGATGAAAGAATGCTCCTGGTGGGTCTTCATGAGCAGCTTAGGAAACGGGTGGTTGGTCAAGATAATGCTATTGCTTCCATTTCTCGTGCTGTTAAGAGATCCCGGGTTGGCTTGAAGGACCCCAACAGACCCATTGCAGCAATGCTTTTTTGTGGCCCAACTGGGGTTGGCAAAACTGAATTGGCAAAAGCTTTAGCGGCATGCTATTTTGGATCAGAGGCAGCAATGGTAAGATTGGACATGAGTGAATATATGGAGCAGCATAGTGTGAGTAAGTTGATAGGATCTCCCCCAGGTTATGTAGGCTATGGAGAGGGAGGCACTCTTACAGAAGCTATCAGAAGGCAACCTTTTACAGTTGTATTGCTTGATGAAATAGAGAAAGCCCATCCCGATATATTCAATATTCTCCTCCAAATGTTTGAAGATGGTCACTTAACAGATTCTCAGGGTCGGAGGGTGTTGTTTAGGAATGCATTGGTTGTCATGACCTCCAATGTGGGTTCTGCTGCCATTGCAAAGGGTAGACAAAGCTCCATTGGTTTCTCAATTGCAGATGATGAACCAACTTCATATGCTGGGATGAAAGCACTGGTAATGGAAGAACTGAAGGCATATTTTCGTCCTGAGTTACTCAACAGATTAGATGAAATAGTTGTGTTCCATCCCCTGGAAAAGGCTCAGATGCTGGAGATTCTGAATACCATGCTCCAGGAGGTGAAGGAAAGGCTCAGCTCTCTGGGAATTGGTATGGAAGTGTCAGTGTCGGTTATAGACCTCTTGTGCCAACAAGGCTATGACAAAAACTATGGTGCCCGTCCACTCAGGAGGGCTGTTACCTTAATTATAGAAGATCCCTTGAGTGAAGCACTTCTCACGGAAGAATACCAGCCTGGTGACATTGCTGTTGTTGATTTGGATGCTTCAGGAAACCCATTTGTAAGGAAGCAGTCAAATAGGAGAATCCACCTCTCTGATACAGCCTATGACGAAAAATTGTAA 2841 44.88 MEVSSSSLSSSSPLSVHWRRDFSPLLGRVSLDCHGSRKLPNRPFSSSTCSCFGISISQRPHSHSFVFRKSSPRISAVFERFTERAIKAVIFSQREAKALGRNMVFTQHLLLGLVAEDRSLDGFLGSGITIDDARDAVRSIWHDYNDSSIISGIPSSQTSVASSTDVPFSISTKRVFEAAIEYSRTMGYNFIAPEHIAIGLFTVDDGSAGRVLKRLGANVNHLAAVAVSRLQGELAKDGSEPSATFKGMQGKSFSGKAAIVKSSGKKKEKSALAQFCVDLTARATDGLIDPVIGRDMEVQRVVQILCRRTKNNPILLGESGVGKTAIAEGLAISIAEADVPSFLLTKRIMSLDIGLLMAGTKERGELEARVTTLISDILKSGNIILFIDEVHMLVGSGIAGRGNKGSGLDIASLLKPSLGRGQLQCFASTTIDEYVKLFEKDKALARRFQPVLINEPSQEEAVRILLGLREKYEAHHKCRFTLEAINAAVHLSARYIPDRRLPDKAIDLIDEAGSKARMEAYKRKKEKQTSVLLKSPDDYWQEIRAVKAMHEMVMASKLKNCNGASCMEDGSTVLFESPLPSMSDDNEPIVVGPNEIAVVASLWSGIPVQQITADERMLLVGLHEQLRKRVVGQDNAIASISRAVKRSRVGLKDPNRPIAAMLFCGPTGVGKTELAKALAACYFGSEAAMVRLDMSEYMEQHSVSKLIGSPPGYVGYGEGGTLTEAIRRQPFTVVLLDEIEKAHPDIFNILLQMFEDGHLTDSQGRRVLFRNALVVMTSNVGSAAIAKGRQSSIGFSIADDEPTSYAGMKALVMEELKAYFRPELLNRLDEIVVFHPLEKAQMLEILNTMLQEVKERLSSLGIGMEVSVSVIDLLCQQGYDKNYGARPLRRAVTLIIEDPLSEALLTEEYQPGDIAVVDLDASGNPFVRKQSNRRIHLSDTAYDEKL* 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 20818 28405 + Vvi19g2 Vvi19g2 781501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g2 946 Pfam AAA domain (Cdc48 subfamily) 656 831 IPR003959 GO:0005524|GO:0016887
Vvi19g2 946 Pfam ATPase family associated with various cellular activities (AAA) 314 415 IPR003959 GO:0005524|GO:0016887
Vvi19g2 946 SUPERFAMILY Double Clp-N motif 79 233 IPR036628 -
Vvi19g2 946 Gene3D - 837 938 - -
Vvi19g2 946 Gene3D - 588 836 IPR027417 -
Vvi19g2 946 SMART AAA_5 657 799 IPR003593 -
Vvi19g2 946 SMART AAA_5 309 458 IPR003593 -
Vvi19g2 946 Pfam C-terminal, D2-small domain, of ClpB protein 837 916 IPR019489 -
Vvi19g2 946 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 60 940 - -
Vvi19g2 946 ProSitePatterns Chaperonins clpA/B signature 2. 691 709 IPR028299 -
Vvi19g2 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 528 IPR027417 -
Vvi19g2 946 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 661 679 IPR001270 GO:0005524
Vvi19g2 946 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 706 724 IPR001270 GO:0005524
Vvi19g2 946 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 735 753 IPR001270 GO:0005524
Vvi19g2 946 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 768 782 IPR001270 GO:0005524
Vvi19g2 946 SMART ClpB_D2_small_2 837 927 IPR019489 -
Vvi19g2 946 PANTHER CHAPERONE PROTEIN CLPD1, CHLOROPLASTIC 60 940 - -
Vvi19g2 946 Pfam Clp amino terminal domain, pathogenicity island component 180 223 IPR004176 -
Vvi19g2 946 Pfam Clp amino terminal domain, pathogenicity island component 93 140 IPR004176 -
Vvi19g2 946 Gene3D - 73 231 IPR036628 -
Vvi19g2 946 Pfam AAA lid domain 457 553 IPR041546 -
Vvi19g2 946 Gene3D - 459 564 IPR027417 -
Vvi19g2 946 CDD AAA 631 779 - -
Vvi19g2 946 ProSitePatterns Chaperonins clpA/B signature 1. 409 421 IPR018368 GO:0005524
Vvi19g2 946 Gene3D - 258 457 IPR027417 -
Vvi19g2 946 ProSiteProfiles Clp repeat (R) domain profile. 78 233 IPR004176 -
Vvi19g2 946 CDD AAA 292 449 - -
Vvi19g2 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 920 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g2 - - - vvi:100248728 1823.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g2 . . . . . . . . . . Cma01g01278 . Car01g01093 Car09g00605 Sed04g2513 Cpe06g00537 . Bhi09g03588 Tan01g4237 Cmetu07g0669 . Hepe01g1479 Mch11g0969 . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01331 Cmo09g00669 . . . . . . . . . . . . . . . . . . . . . Csa04g00829 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011477 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 31