Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g20 | ATGGTTCACGCCACCTGCTATGGCAATCCCCTCGTGAAGGGTGTTCCTGAAGGTGACTGGTTCTGCAACCAATGCTTGGGTTCTCATTCTTCTCAAAACAAGAAGAATCCTAAGGCCTTCTCTTGCTGCCTCTGCCCAAACACTGGTGGAGCCATGAAGCCCACCGAGGATGGGCGGTGGGCTCACATAGTGTGCGCTCTTCTTGTTCCGGAGGTCTTCTTCAAGGACCCGGAAGGCCGAGATGGTGTAGATCGCTCTAAGGTTCCATTGAGAAGGTGGAAAGAGAAGTGCTATGTGTGCAAAAGTTCAAATGGGTGTGCCATCGATTGCTCTGAGCCCAAATGCCCTTTGGCATTCCATGTGACTTGTGGGCTGAGGGAGGAGCTCTGTATTGAGTACAGAGAAGGCAGGAACAAGGGTGGCATTGTTGCTGGGTTCTGCATGAATCACACTCAATTATGGAAGAAGCAACAGCAGACAGGGAAGTTCAAGATTGTGGCCAGGGATGATGACAAGAGGCAATGA | 525 | 51.05 | MVHATCYGNPLVKGVPEGDWFCNQCLGSHSSQNKKNPKAFSCCLCPNTGGAMKPTEDGRWAHIVCALLVPEVFFKDPEGRDGVDRSKVPLRRWKEKCYVCKSSNGCAIDCSEPKCPLAFHVTCGLREELCIEYREGRNKGGIVAGFCMNHTQLWKKQQQTGKFKIVARDDDKRQ* | 175 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 241616 | 242370 | - | Vvi19g20 | Vvi19g20 | 781519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g20 | 174 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 39 | 151 | IPR034732 | - | |
| Vvi19g20 | 174 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 37 | IPR013083 | - | |
| Vvi19g20 | 174 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 171 | - | - | |
| Vvi19g20 | 174 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 153 | IPR013083 | - | |
| Vvi19g20 | 174 | Pfam | PHD-zinc-finger like domain | 41 | 137 | - | - | |
| Vvi19g20 | 174 | SUPERFAMILY | FYVE/PHD zinc finger | 2 | 29 | IPR011011 | - | |
| Vvi19g20 | 174 | PANTHER | PHD FINGER PROTEINS | 1 | 171 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi19g20 | K11380 | - | vvi:100252016 | 386.341 |