Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g20 ATGGTTCACGCCACCTGCTATGGCAATCCCCTCGTGAAGGGTGTTCCTGAAGGTGACTGGTTCTGCAACCAATGCTTGGGTTCTCATTCTTCTCAAAACAAGAAGAATCCTAAGGCCTTCTCTTGCTGCCTCTGCCCAAACACTGGTGGAGCCATGAAGCCCACCGAGGATGGGCGGTGGGCTCACATAGTGTGCGCTCTTCTTGTTCCGGAGGTCTTCTTCAAGGACCCGGAAGGCCGAGATGGTGTAGATCGCTCTAAGGTTCCATTGAGAAGGTGGAAAGAGAAGTGCTATGTGTGCAAAAGTTCAAATGGGTGTGCCATCGATTGCTCTGAGCCCAAATGCCCTTTGGCATTCCATGTGACTTGTGGGCTGAGGGAGGAGCTCTGTATTGAGTACAGAGAAGGCAGGAACAAGGGTGGCATTGTTGCTGGGTTCTGCATGAATCACACTCAATTATGGAAGAAGCAACAGCAGACAGGGAAGTTCAAGATTGTGGCCAGGGATGATGACAAGAGGCAATGA 525 51.05 MVHATCYGNPLVKGVPEGDWFCNQCLGSHSSQNKKNPKAFSCCLCPNTGGAMKPTEDGRWAHIVCALLVPEVFFKDPEGRDGVDRSKVPLRRWKEKCYVCKSSNGCAIDCSEPKCPLAFHVTCGLREELCIEYREGRNKGGIVAGFCMNHTQLWKKQQQTGKFKIVARDDDKRQ* 175
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 241616 242370 - Vvi19g20 Vvi19g20 781519
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g20 174 ProSiteProfiles Extended PHD (ePHD) domain profile. 39 151 IPR034732 -
Vvi19g20 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 37 IPR013083 -
Vvi19g20 174 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 171 - -
Vvi19g20 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 153 IPR013083 -
Vvi19g20 174 Pfam PHD-zinc-finger like domain 41 137 - -
Vvi19g20 174 SUPERFAMILY FYVE/PHD zinc finger 2 29 IPR011011 -
Vvi19g20 174 PANTHER PHD FINGER PROTEINS 1 171 - -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g20 K11380 - vvi:100252016 386.341