Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g201 ATGGCTGCTACATCGCAAGCGTATCTGGAGAGCATGCCTGTGAATGACACGAGAAAGCTACTATCGGACCTCTGCCGTCACTTCTACGGCCTTGGTTGGGTTTCAGGGACGGGTGGCAGCATCACAATCAAGGTCCATGATGAATCCATCCCTAAGCCTCAACAGCTCATTGTCATGTCCCCTTCCGGGGTTCAAAAGGAAAGGATGGTTCCAGAGGACATGTATGTGTTATCTCCAAGTGGGTGTTTCTTGTCTTCCCCATCTCCGAAGCCATACCCAAATAAGCCTCCCAAATGCAGTGATTGTGCTCCTCTTTTCATGAAGGCATATCTGATGCGCAATGCTGGAGCTGTCATCCACAGTCATGGGATGGAATCATGTATTGTGACAATGATTGATCCATTATCCAAAGAATTTCGAATCACTCATATGGAAATGATAAAAGGAATTCAAGGACATGGTTATTATGATGAGCTTGTGGTCCCAATCATAGAGAACACTGCCCACGAAAGGGAGCTCACAGATGCCCTTGCTGAAGCTATTGAAGCCTACCCGAAAACAACAGCTGTCCTTGTTCGCAACCATGGCATATATATATGGGGAGACTCATGGATTCATGCTAAAACTCAGGCTGAATGCTACCACTATCTCTTTGATGCTGCTATCAAACTTTACCAATTGGGCCTTGACTGGTCTACTCCAGATCATGGTCCAATTAAAAAATATGGTGGCAAAACAAATATGTCTGTGAAGGCAGGGACTGTAAATTCCAATCATGAGACTGAACCATCGCGACGTTGTATTGTTCTTGACATCGAAGGGACTACCACTCCTATATCATTTGTGACCGATGTTCTCTTTCCCTTTGCCCGCAATAATGTGAGTAGGCATTTGGCTGCAACGTATGAGACTGATGAAACTCAGGATGATATCAAGTTGTTGCGCACTCAGGTCCAGAGTGACTTGGAACAAGGTATTGTTGGTGCTGTGCCCATCCCACCAGATGATGCAGGGAAAGAGGAGGTGATTGCGGCTTTGGTTGCTAACGTGGAAGCAATGATAAAAGCCGACAGGAAGATCACAGCCTTAAAACAATTACAAGGTCATATTTGGCGAACTGGATTTCAGAATAATGAATTGGAGGGAGTCGTTTTTGAGGATGTGCCAGAAGCTCTTCAGAAGTGGCATGCTTCAGGAATAAAGGTGTACATATATTCTAGTGGTAGCAGGTTGGCTCAAAGGCTTCTATTTGGATACACAAACTATGGGGACCTAAGAAAATATTTATGTGGATTTTTCGACACTACAGTGGGGAATAAAAGAGAAACAAAGAGTTATGTTGAAATCACCGAGTCAGTGGGAGTTGATAAGCCATCGGAGATTTTGTTTGTGACAGATGTCTATCAAGAAGCTGTTGCTGCAAAGGCAGCAGGGTTGGAGGTGATAATCTCTATTCGACCAGGAAATGGACCTCTTCCAGATAATCACGGGTTCAAGACAATCACATCTTTTTCAGACATTTGA 1524 44.36 MAATSQAYLESMPVNDTRKLLSDLCRHFYGLGWVSGTGGSITIKVHDESIPKPQQLIVMSPSGVQKERMVPEDMYVLSPSGCFLSSPSPKPYPNKPPKCSDCAPLFMKAYLMRNAGAVIHSHGMESCIVTMIDPLSKEFRITHMEMIKGIQGHGYYDELVVPIIENTAHERELTDALAEAIEAYPKTTAVLVRNHGIYIWGDSWIHAKTQAECYHYLFDAAIKLYQLGLDWSTPDHGPIKKYGGKTNMSVKAGTVNSNHETEPSRRCIVLDIEGTTTPISFVTDVLFPFARNNVSRHLAATYETDETQDDIKLLRTQVQSDLEQGIVGAVPIPPDDAGKEEVIAALVANVEAMIKADRKITALKQLQGHIWRTGFQNNELEGVVFEDVPEALQKWHASGIKVYIYSSGSRLAQRLLFGYTNYGDLRKYLCGFFDTTVGNKRETKSYVEITESVGVDKPSEILFVTDVYQEAVAAKAAGLEVIISIRPGNGPLPDNHGFKTITSFSDI* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2576355 2588557 + Vvi19g201 Vvi19g201 781700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g201 507 Gene3D - 14 238 IPR036409 -
Vvi19g201 507 Hamap Enolase-phosphatase E1 [mtnC]. 264 507 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi19g201 507 Pfam Class II Aldolase and Adducin N-terminal domain 21 221 IPR001303 -
Vvi19g201 507 Gene3D - 279 374 - -
Vvi19g201 507 SFLD enolase-phosphatase 266 506 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi19g201 507 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 3 507 - -
Vvi19g201 507 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 6 507 IPR027505 -
Vvi19g201 507 Pfam haloacid dehalogenase-like hydrolase 267 478 - -
Vvi19g201 507 SUPERFAMILY HAD-like 266 507 IPR036412 -
Vvi19g201 507 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 3 507 IPR017714 GO:0005737|GO:0019509|GO:0046872
Vvi19g201 507 CDD HAD_EP 267 488 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi19g201 507 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 6 230 IPR027514 GO:0005737|GO:0019509|GO:0046872
Vvi19g201 507 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 266 506 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi19g201 507 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 351 478 IPR006439 -
Vvi19g201 507 Gene3D - 375 507 IPR023214 -
Vvi19g201 507 SUPERFAMILY AraD/HMP-PK domain-like 16 236 IPR036409 -
Vvi19g201 507 SMART Aldolase_II_2 19 222 IPR001303 -
Vvi19g201 507 Hamap Enolase-phosphatase E1 [ENOPH1]. 266 507 IPR027511 GO:0019509
Vvi19g201 507 SFLD Haloacid Dehalogenase 266 506 - -
Vvi19g201 507 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 21 226 IPR017714 GO:0005737|GO:0019509|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g201 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - vvi:100257258 1019.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g284 Vvi19g201 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57