Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g209 ATGTTCATCTTATCTTATCCTCATTTCAAATGTATGAACATCATTCATTTGGTCCCCCACAATATTGTTAAATCTTTGCATATAAGACATGTAACACATGCCTGCAAAGAAAAAGAACTTGAAGGACTGAAAGAAGAAGTGAGAAAGGAGCTAAAAGCTACTGCTGGGAAGTCTTCACAACTGCTGAACTTCATAGATTCCATCCAACGCTCGGGCTTGGCTTACCACTTTGAAAGGGAGATAGAAGAAGCATTAAAAGTTATGTATGAAACATATAATTTGGTTGATGATGATAACGATGACCTTGCCAGTGCTGCTCTTCGAATCCGGTTACTAAGACAAGAAGGCTACCACATTCCATCCGATGTATTTAAGAAGTTCAAGGACGAGGAAGGCAACTTCAAGGAATCATTGGTGGGTGACTTACCAGGCATGCTAGCTCTATATGAAGCTACACATTTAATGCGGCCGATTCGCAAGAGCTTAATAAGGGTGGAGGCAAGGCACTACATTTCCATCTACCAAGAATATGATTCACATAATAAATCTTTACTTAAGCTTGCAAAGTTAGATTTCAACCTGTTGCAGTCACTCCACAGGAAAGAGCTGAGTGAGATCACTAAGTGGTGGAAAGGTTTAGATTTTGCTACAAAGCTACCCTTTGCAAGGGACAGAATAGTGGAGGGATACTTTTGGGTATTGGGAGTGTACTTTGAGCCCCAATATTTCCTTGCTAGAAGGATCTTACTGAAAGTATTCGCCATGACATCCATTATAGATGATATATATGACACACATGGTACATTTGAAGAACTCAAACTCTTTGCCGAAGCGATTGAGAGATGGGATGCCGGCAGCATAGATCAACTCCCAGATTATATGAAGTTGTGTTATCAGGCTCTCTTAGATGTCTTTGAAGAAATAGAGGAAGAGATGACCAAGCAAGAAAAACCATACCGTGTTCACTATGCAAAACAAGCAATGAAAAAGCAAGTCCAAGCCTATTTTGTTGAAGCCAAATGGTTGAAGCAAGAATATATACCAACAATTGAGGAGTACATGACCAATGCACTAGTAAGTTGTGGCTACTTTCAGCTCGCAACCATATCTTTTGTTGGCATGGGAGATATGGTAACCAAGAAGGCCTTCGATTGGGTTTTCAGTGACCCCAAGATGGTTAGAGCTTCAGCAATCATTTGCAGGCTCATGGATGACATAGTTGACCATGAGTTTGAGCAAAAAAGAGGATATGTTGTCTCAAGAGTTCAATGCTACATGAAGCAATATGGTGTTACTGAGCAAGAGGCGTGTGAGGAGTTCAATAATGAAATAATGAATGCATGGAAGGATATGAATGAGGAGTGTCTCAAACGTACACAAGTGCCCATGCCTCTTCTCACATGTGTTGTTAATTTTGCCCGTGTGATAGATCTCTTATACAAGAATCAAGACGAGTACACACATGTGGGGAAGTTGATGAAAGATCTTATTGCATGGATGCTTATAGACCCTGTGCCAATGCAAGTCCAAGCCTACCTTCTTGAAGCCAAATGGTTGAAGCAAGAATATATACCAAGAATGGAGGAGTACATGAGCAACGCGCTGGTAAGCTCTGCCTGCTCTATGCTTACAACCACATCTTTCGTCGGTATGGGAGATATAGTAACCAAGGAGGCCTTCGATTGGGTTTTCAGTGACCCTAAGATGATTAGAGCTTCAAACGTCATTTGCAGGCTTATGGATGACATAGTTTCCCATGAGCAAAAAAGAGGGCATGTAGCNTCAGCCGTAGAATGCTACATGAAGCAATATGGGGTTTCAAAGGAAGAAGCTTATGATGAGTTCAAGAAGCAAGTAGAGAGTGCATGGAAGGATAATAATGAGGAGTTCCTGCAACCTACAGCAGTGCCAGTTCCACTCCTCACCCGTGTTCTGAATTTTAGCCGGATGATGGACGTCTTGTACAAGGACGAAGATGAGTACACGCTGGTTGGACCATTGATGAAAGATCTGGTTGCAGGGATGCTCATAGATCCTGTGCCAATGTAA 2049 41.73 MFILSYPHFKCMNIIHLVPHNIVKSLHIRHVTHACKEKELEGLKEEVRKELKATAGKSSQLLNFIDSIQRSGLAYHFEREIEEALKVMYETYNLVDDDNDDLASAALRIRLLRQEGYHIPSDVFKKFKDEEGNFKESLVGDLPGMLALYEATHLMRPIRKSLIRVEARHYISIYQEYDSHNKSLLKLAKLDFNLLQSLHRKELSEITKWWKGLDFATKLPFARDRIVEGYFWVLGVYFEPQYFLARRILLKVFAMTSIIDDIYDTHGTFEELKLFAEAIERWDAGSIDQLPDYMKLCYQALLDVFEEIEEEMTKQEKPYRVHYAKQAMKKQVQAYFVEAKWLKQEYIPTIEEYMTNALVSCGYFQLATISFVGMGDMVTKKAFDWVFSDPKMVRASAIICRLMDDIVDHEFEQKRGYVVSRVQCYMKQYGVTEQEACEEFNNEIMNAWKDMNEECLKRTQVPMPLLTCVVNFARVIDLLYKNQDEYTHVGKLMKDLIAWMLIDPVPMQVQAYLLEAKWLKQEYIPRMEEYMSNALVSSACSMLTTTSFVGMGDIVTKEAFDWVFSDPKMIRASNVICRLMDDIVSHEQKRGHVXSAVECYMKQYGVSKEEAYDEFKKQVESAWKDNNEEFLQPTAVPVPLLTRVLNFSRMMDVLYKDEDEYTLVGPLMKDLVAGMLIDPVPM* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2643179 2661593 - Vvi19g209 Vvi19g209 781708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g209 682 PANTHER TERPENE SYNTHASE 2-RELATED 35 154 - -
Vvi19g209 682 Coils Coil 33 53 - -
Vvi19g209 682 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 27 180 IPR008930 -
Vvi19g209 682 SFLD Terpene Cyclase Like 1 C Terminal Domain 180 505 IPR034741 -
Vvi19g209 682 PANTHER OS04G0344100 PROTEIN-RELATED 509 661 - -
Vvi19g209 682 PANTHER OS04G0344100 PROTEIN-RELATED 154 492 - -
Vvi19g209 682 Gene3D Farnesyl Diphosphate Synthase 195 508 IPR008949 -
Vvi19g209 682 CDD Terpene_cyclase_plant_C1 47 504 IPR044814 GO:0010333|GO:0016102
Vvi19g209 682 Pfam Terpene synthase family, metal binding domain 503 625 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g209 682 Pfam Terpene synthase family, metal binding domain 185 450 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g209 682 Gene3D - 156 194 IPR036965 GO:0010333|GO:0016829
Vvi19g209 682 Gene3D Farnesyl Diphosphate Synthase 509 680 IPR008949 -
Vvi19g209 682 SFLD Isoprenoid Synthase Type I 180 505 - -
Vvi19g209 682 SUPERFAMILY Terpenoid synthases 180 505 IPR008949 -
Vvi19g209 682 Pfam Terpene synthase, N-terminal domain 32 157 IPR001906 GO:0010333|GO:0016829
Vvi19g209 682 PANTHER TERPENE SYNTHASE 2-RELATED 509 661 - -
Vvi19g209 682 PANTHER TERPENE SYNTHASE 2-RELATED 154 492 - -
Vvi19g209 682 PANTHER OS04G0344100 PROTEIN-RELATED 35 154 - -
Vvi19g209 682 SUPERFAMILY Terpenoid synthases 509 680 IPR008949 -
Vvi19g209 682 Gene3D - 19 155 IPR036965 GO:0010333|GO:0016829
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g209 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 vvi:100267551 893.264
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g209 . . . . . . . Bma13g00950 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337