Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g212 ATGGCTGCCACCGGCTTCACAACCCCTTCTGTTCTAAGAAAAGCGCTTCACTCTTTTTTACCTCTTCGCCTCACTCACATCAACAACACGCTCTTCTACTATAAAAATCTTCGCTCTTTTCCTCTCTCAACCCATCTGAATTCTTCAGCTTCAGGGATGTGTCACTTGGCACAAGCTATGAAGGGGGATGCTAATTCTTTACTCAAAGGAGTAGCAGACAGAAGCACTATTGAAGCTGTGAAACATATTCTTGAAATGGCAAAACGAGCATCAGCAAGGAGAGAAGTTCTCCACACTGATTTTCTTACTCCACCAGTACTGAAGGAATCAATGATAGTGTTGGAAAAGCTAGCTGACATGAAAGCTGTTGCACAGGGAGGATACCCTCAGGCTGAGCGTTGCCGACTTTCAGTTGGACATTCAGAGGTATTGACAACTGCTCCAGATATAGTTGCAGCATTGCGTATCACAGGAAACTTTGGGTTTCAATCTTGTTCTCATGGTGACTTCCTTGGCGCAATTCTTGGTACAGGGATTGCTAGGGAAAAGCTTGGGGATATCATCCTGCAGGGAGAAAAAGGGGCTCAAGTCCTGATTGTTCCAGAACTTGTTGACTTCCTTGTATCATCCCTAGAGAAGGTTGGCAATGTTTCAGTCTCTTGTACAAAGATGCCGTTGCTTGCTCTTGAATATGAAGAGCCAAGGACTACAACATTCAAAACCATAGAACTATCACTAAGGGTTGATGCACTAGCTAGTGCAGGGTTCAAGCTTTCACGATCCAAACTAGTTGATTTGATCAGTAATGGGGATGTTCGTGTTAACTGGACCACCGTGACGAAAAACGGAACAACACTCAAGACTGGAGATGTTGTCTCAGTTAGTGGAAAGGGAAGACTAAAGATTGGAGAGATAAACTCGACAAAGAAGGGAAAGTACGCGGTTGAGCTCATTCGATTCCTATAA 966 44.1 MAATGFTTPSVLRKALHSFLPLRLTHINNTLFYYKNLRSFPLSTHLNSSASGMCHLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLADMKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFLGAILGTGIAREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2686235 2691922 - Vvi19g212 Vvi19g212 781711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g212 321 SMART s4_6 246 306 IPR002942 GO:0003723
Vvi19g212 321 TIGRFAM PS_II_S4: photosystem II S4 domain protein 66 319 IPR017506 -
Vvi19g212 321 Pfam S4 domain 250 292 IPR002942 GO:0003723
Vvi19g212 321 Gene3D - 149 228 IPR012677 -
Vvi19g212 321 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 52 321 - -
Vvi19g212 321 SUPERFAMILY Alpha-L RNA-binding motif 125 309 - -
Vvi19g212 321 Pfam Putative RNA-binding domain in YlmH 154 226 IPR040591 -
Vvi19g212 321 CDD S4 247 301 - -
Vvi19g212 321 Gene3D - 73 139 - -
Vvi19g212 321 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 52 321 - -
Vvi19g212 321 Gene3D - 246 298 IPR036986 GO:0003723
Vvi19g212 321 ProSiteProfiles S4 RNA-binding domain profile. 246 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g212 - - - vvi:100248657 618.231
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g212 . . . . Bpe09g00236 . . Bma13g00952 . Cmo04g00586 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1060 . . . . . . Blo10g00761 . Bda12g00838 . . . . . . . Cma04g00552 . Car04g00521 . . Cpe01g00494 . . . . . . . Cla05g01006 Cam05g1095 Cec05g1105 Cco05g1098 Clacu05g1091 Cmu05g1042 Cre05g1115 . . Chy06g01159 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010642 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32