Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g213 ATGGGCATCAGAGTCCAGACTGGGTTCTTTTTTCTTCATGTTCTGGTTCTCTTCTTTTTGTCTTTCTACATGCATCTCTCCATTGGGGTAGATACCATCTTTCCAGGCCAACCTATCTCTGGAAACCAGACAATAACTTCACAGGATGAAAGATTTGAACTGGGTTTCTTCAAACCAAACAACTCCCAGAACTATTACATAGGGATCTGGTACAAAAAAGTCCCAGTTCATACAGTTGTTTGGGTGGCAAACAGATATAAACCCCTTGCTGATCCTTTTTCGTCAAAACTAGAACTCTCCGTTAATGGAAACCTTGTCGTCCAAAACCAGTCCAAAATCCAAGTGTGGTCAACTAGCATCATCTCAAGCACCCTGAATTCTACCTTCGCACTTACCAAGAAGCAGCAAATCTACTCTTCATGGAGCAGTTATGATGATCCTGCACCAGGGCCCTTCTTGCTCAAGCTAGACCCGAATGGAACGAGGCAATACTTTATCATGTGGAACGGAGACAAGCACTGGACTTGTGGGATCTGGCCAGGGCGTGTTTCGGTCTTCGGTCCTGATATGTTAGATGACAACTACAACAACATGACCTATGTGTCGAATGAGGAAGAGAACTATTTCACCTACTCAGTGACCAAAACCTCCATTCTATCAAGATTTGTGATGGATTCATCTGGGCAGCTCAGGCAGCTCACATGGTTGGAGGACTCCCAACAGTGGAAGTTGATCTGGTCTCGACCCCAGCAGCAATGCGAGATCTATGCCTTATGTGGGGAATATGGTGGCTGCAATCAGTTCAGTGTTCCCACATGTAAATGCCTGCAAGGATTTGAACCAAGGTTTCCCACAGAATGGATCTCTGGAAATCACTCCCATGGATGTGTGAGGACAACCCCATTGCAGTGCAGGAAAGGAGGAAAAGATGGCTTCCGGATGATTCCAAACATAAGATTACCAGCAAATGCTGTATCTTTAACAGTAAGGAGCTCTAAAGAATGTGAGGCTGCTTGCTTAGAGAACTGTACTTGTACTGCATATACTTTTGATGGTGAGTGTTCAATATGGCTAGAAAATTTGTTGAATATTCAGTATCTTTCGTTCGGTGATAATCTGGGAAAAGATCTACATCTACGAGTGGCAGCGGTGGAGCTGGTAGTTTACAGAAGCCGGACAAAGCCAAGGATCAATGGGGACATTGTGGGTGCTGCTGCAGGGGTTGCTACCCTAACCGTTATCCTAGGGTTCATCATTTGGAAGTGCAGGAGAAGGCAGTTTTCTAGTGCAGTGAAGCCAACAGAGGACTTATTGGTCCTCTATAAGTACAGTGATCTAAGGAAAGCAACAAAGAACTTTTCTGAGAAGTTGGGTGAAGGAGGCTTTGGTTCAGTGTTCAAAGGGACTCTGCCCAATTCGGCTGAAATAGCTGCGAAGAAACTCAAATGCCATGGACAGGGAGAGAAGCAGTTCAGAGCAGAAGTCAGCACCATTGGGACAATCCATCACATAAATCTCATTCGCCTTCGAGGGTTTTGTCTTGAAGGTACAAAAAGGTTTCTGGTCTATGAATACATGCCCAATGGCTCTCTAGAAAGCCATTTGTTTCAGAAGAGCCCTAGGATCTTAGACTGGAAAACAAGGTGCCAGATTGCACTTGGGATCGCTCGAGGCTTAGAGTATCTCCACGAAAAGTGCAGAGACTGCATCATACATTGTGATATCAAGCCAGAAAACATACTACTGGATGCTGGGTATAATCCTAAGATTTCAGACTTTGGCTTAGCAAAGCTCTTAGGCCGGGACTTCAGCCGGGTTCTAACAACCGTAAAAGGAACCAGAGGATACCTTGCACCAGAATGGATTTCAGGCATAGCTATCACTGCAAAAGCTGATGTCTTCAGCTATGGGATGATGCTTTTTGAGATTATATCAGGAAGGAGGAACTGGGAGATAAAGGATGACAGGATGAATGATTATTTTCCAGCACAAGTCATGAAGAAATTAAGCAGAGGTGAGGAACTTCTAACCTTGCTAGATGAGAAGTTGGAGCAGAATGCAGACATAGAAGAGCTCACCAGAGTCTGCAAAGTAGCTTGTTGGTGCATTCAGGATGATGAAGGTGACAGACCCTCCATGAAATCTGTTGTTCAAATACTCGAGGGAGCGCTGAACGTAATCATGCCACCAATCCCATCATTTATCGAAAACATTGCAGAAAATCCAGAGGAAGGCAGCCCCACCCCTGGGTTCTGA 2256 44.9 MGIRVQTGFFFLHVLVLFFLSFYMHLSIGVDTIFPGQPISGNQTITSQDERFELGFFKPNNSQNYYIGIWYKKVPVHTVVWVANRYKPLADPFSSKLELSVNGNLVVQNQSKIQVWSTSIISSTLNSTFALTKKQQIYSSWSSYDDPAPGPFLLKLDPNGTRQYFIMWNGDKHWTCGIWPGRVSVFGPDMLDDNYNNMTYVSNEEENYFTYSVTKTSILSRFVMDSSGQLRQLTWLEDSQQWKLIWSRPQQQCEIYALCGEYGGCNQFSVPTCKCLQGFEPRFPTEWISGNHSHGCVRTTPLQCRKGGKDGFRMIPNIRLPANAVSLTVRSSKECEAACLENCTCTAYTFDGECSIWLENLLNIQYLSFGDNLGKDLHLRVAAVELVVYRSRTKPRINGDIVGAAAGVATLTVILGFIIWKCRRRQFSSAVKPTEDLLVLYKYSDLRKATKNFSEKLGEGGFGSVFKGTLPNSAEIAAKKLKCHGQGEKQFRAEVSTIGTIHHINLIRLRGFCLEGTKRFLVYEYMPNGSLESHLFQKSPRILDWKTRCQIALGIARGLEYLHEKCRDCIIHCDIKPENILLDAGYNPKISDFGLAKLLGRDFSRVLTTVKGTRGYLAPEWISGIAITAKADVFSYGMMLFEIISGRRNWEIKDDRMNDYFPAQVMKKLSRGEELLTLLDEKLEQNADIEELTRVCKVACWCIQDDEGDRPSMKSVVQILEGALNVIMPPIPSFIENIAENPEEGSPTPGF* 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2699750 2702129 + Vvi19g213 Vvi19g213 781712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g213 751 Pfam D-mannose binding lectin 78 128 IPR001480 -
Vvi19g213 751 SMART serkin_6 451 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g213 751 ProSiteProfiles PAN/Apple domain profile. 304 382 IPR003609 -
Vvi19g213 751 ProSitePatterns Protein kinases ATP-binding region signature. 457 480 IPR017441 GO:0005524
Vvi19g213 751 PANTHER LECTIN PROTEIN KINASE FAMILY PROTEIN, PUTATIVE-RELATED 7 131 - -
Vvi19g213 751 PANTHER LECTIN PROTEIN KINASE FAMILY PROTEIN, PUTATIVE-RELATED 131 745 - -
Vvi19g213 751 CDD PAN_AP_plant 300 382 - -
Vvi19g213 751 Gene3D Phosphorylase Kinase; domain 1 417 525 - -
Vvi19g213 751 ProSiteProfiles Protein kinase domain profile. 451 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g213 751 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Vvi19g213 751 CDD B_lectin 37 147 IPR001480 -
Vvi19g213 751 Gene3D - 26 177 IPR036426 -
Vvi19g213 751 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 179 IPR036426 -
Vvi19g213 751 PIRSF SRK 122 749 IPR024171 GO:0004674
Vvi19g213 751 PIRSF SRK 4 136 IPR024171 GO:0004674
Vvi19g213 751 Pfam PAN-like domain 304 364 IPR003609 -
Vvi19g213 751 CDD STKc_IRAK 457 722 - -
Vvi19g213 751 SUPERFAMILY Hairpin loop containing domain-like 310 365 - -
Vvi19g213 751 SUPERFAMILY Protein kinase-like (PK-like) 435 721 IPR011009 -
Vvi19g213 751 SMART ntp_6 307 381 IPR003609 -
Vvi19g213 751 SMART blect_4 36 147 IPR001480 -
Vvi19g213 751 Pfam Protein kinase domain 454 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g213 751 Pfam S-locus glycoprotein domain 174 282 IPR000858 GO:0048544
Vvi19g213 751 Gene3D Transferase(Phosphotransferase) domain 1 526 727 - -
Vvi19g213 751 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 131 - -
Vvi19g213 751 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 131 745 - -
Vvi19g213 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g213 - - - vvi:100253752 1503.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g287 Vvi19g213 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g213 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004528 2 0 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 2 1 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76417 PF00069 Pkinase 5.90E-52 CL0016 Vvi PK