Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g218 ATGGCTTGTAGGTCAAAGCTAAGCAGTATATGTTGGAATAGTTATATCAAAAGCCAGATTGCTTCCAGTAACTTTGAAGGTGTAGTACAGGTATGGGATGTTACAAGAAGTCAAGTACTTACAGAAATGAGAGAGCATGAGAGGCGTGTATGGTCCATCGACTACTCATTAGCAGATCCAACAATGTTGGCTAGCGGCAGTGATGATGGTTCAGTTAAGCTATGGAGTATCAATCAGGCAATTCTATTTTTGCACTTGGTGGATGTCAGCTTTGAAACTAAACGGAGTAAGTGTTGGTACCATCAAAACGAAGGCCAATGTATGCTGTGTTCAGTTTACCCCAGACTCTGGCCGTTACCTTGCTTTTGGTTCAGCTGA 378 42.33 MACRSKLSSICWNSYIKSQIASSNFEGVVQVWDVTRSQVLTEMREHERRVWSIDYSLADPTMLASGSDDGSVKLWSINQAILFLHLVDVSFETKRSKCWYHQNEGQCMLCSVYPRLWPLPCFWFS* 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2723239 2724364 - Vvi19g218 Vvi19g218 781717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g218 125 PANTHER PROTEIN SPA1-RELATED 3 1 96 - -
Vvi19g218 125 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 43 78 - -
Vvi19g218 125 PANTHER PROTEIN SPA1-RELATED 2 1 96 IPR044630 GO:0009640
Vvi19g218 125 SMART WD40_4 36 76 IPR001680 GO:0005515
Vvi19g218 125 SUPERFAMILY WD40 repeat-like 7 108 IPR036322 GO:0005515
Vvi19g218 125 Pfam WD domain, G-beta repeat 39 76 IPR001680 GO:0005515
Vvi19g218 125 Gene3D - 1 112 IPR015943 GO:0005515
Vvi19g218 125 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 78 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g218 - - - mesc:110600703 164.851
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45