Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g220 ATGGGTTGCATTTGTTGTAAGCCTTCTGCCATTGAGGATAGTAGGGAGAGTCCAAGAGAGCGGTTGTCGAGTAAGGCATCATCAAACCTGCGGGTGGCGGGGCCAGCCTCCTCCCGGAGAGAGGAAGCTTATCGTGTAAAAGATAGGTTTGATAGTAATGATGGGAGGACAATGCTGATTGAAAAGCAAGCTAATGGTTCAGTTCGGTTGCATGGTGAGAACGTTGAGAGGAAGAGGGAGAGGGGTGAATATGTTGTTGCCCAACATCCGGGATTGGGGAGTATCCCGAAAGCAATGGAAGGAGAACAGGTTGCTGCCGGTTGGCCTGCTTGGTTATCTGCAGTGGCTGGAGAAGCTATAAGGGGATGGTTACCAAGGCGGGCCGATTCTTTTGAGAAACTAGATAAAATTGGCCAGGGAACTTACAGTAATGTTTACAGGGCTCGTGATCTGGACCAACGGAAAATTGTTGCTTTGAAGAAAGTTAGGTTTGATAACCTGGAGCCAGAGAGTGTCCGCTTTATGGCAAGGGAAATTCACGTTCTGCGCAGGCTTGATCATCCAAATATAATAAAACTGGAAGGTCTAGTCACATCAAGGATGTCTTGCAGCTTGTATCTTGTTTTTGAGTACATGGAACATGATCTAGCAGGTCTCGCCTCACACCCTGGTCTCAAGTTTACAGAACCACAGGTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGCATCGTGATATAAAGGGTTCCAACCTTCTAATTGACAACAGTGGCATCTTGAAGATAGCAGACTTTGGTTTGGCAAGTTTTTTTGATCCCCATCAAATCCAGCCACTGACAAGCCGTGTGGTAACACTTTGGTACCGGCCACCTGAGCTCTTACTTGGAGCCACTTACTATGGGACTGCTGTGGATTTATGGAGCACTGGTTGTATACTGGCTGAACTATATGCTGGCAAGCCTATAATGCCAGGAAGAACAGAGGTGGAACAGTTGCATAAAATTTTCAAGCTTTGTGGCTCTCCATCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCTTATAGGCGCTGTGTTGCAGAAACATTTAAAGACTTTCCTACACCTGCATTAGGGCTTATGGAAACACTTCTTTCCATAGATCCTGCTGATCGTGGATCTGCAGCCTCTGCTCTTAAAAGTGAGTTCTTTACAGTAAAGCCACTTCCTTGTGATCCTTCAAGCTTGCCTAAGTATCCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGACAAGGAGCAACAGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAATAAGAGAGTCTCGAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCTCATCCAGAAGAAGTTGCTTCTGGTTTTCCAATAGACCCTCCTAGGCCGTCTCAAGCTATAGAAGATGGAAGCATAGATACCCAAGGCCCTCTTCATAAGAGAGCCTCCCATTCAGGCCCACTGGCTCACCGGGCTGTGTGGGCAAAGGCTGGGAAAAACCTGGATGATGCTCCAAAGGTTTCGACTGGAGCCGACTTGTCAACCATGTCGAGTTTAGTAGCAGCCAGGAGGAGCTTGTTGTCTGAAGATCGCAGAGAAAAGTCTGGTTCATCACAACCAGATGTCTCAAAACTAATAGTCAGGTTTCCAGGATCCTTCAAGGAGGCCTCAGAATCCACAATACAGCAGGATCAGAAGCATCAAATGCAGGGTGCCGGCAGATGTACTCAGAAAGAAGATGGAAGAATGACCAGCAAAGATCCAGTTCTTCTTGGGTATGGGTCAAAGGGTCACAAGATTCACTACTCTGGCCCACTACTTGTTCCCTCAGGCAAGGTGGATCAGATGCTAAAGGACCATGACCGCCAGATACAAGATGCTGAAAGACGAGCACGTCTAGACAGGGAAAAACTCAGAAAAGTTCAGGTTGAAGGGAACAAAATATCAGCCAATTCTTTATTTGTTTCTGGTCGTTGA 2139 46.42 MGCICCKPSAIEDSRESPRERLSSKASSNLRVAGPASSRREEAYRVKDRFDSNDGRTMLIEKQANGSVRLHGENVERKRERGEYVVAQHPGLGSIPKAMEGEQVAAGWPAWLSAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQRKIVALKKVRFDNLEPESVRFMAREIHVLRRLDHPNIIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEPQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNSGILKIADFGLASFFDPHQIQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALGLMETLLSIDPADRGSAASALKSEFFTVKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGATGKGQRLDHERKGIRESRAVPAPDANAELVLSMQKRQGQSNSKSRSEKFNPHPEEVASGFPIDPPRPSQAIEDGSIDTQGPLHKRASHSGPLAHRAVWAKAGKNLDDAPKVSTGADLSTMSSLVAARRSLLSEDRREKSGSSQPDVSKLIVRFPGSFKEASESTIQQDQKHQMQGAGRCTQKEDGRMTSKDPVLLGYGSKGHKIHYSGPLLVPSGKVDQMLKDHDRQIQDAERRARLDREKLRKVQVEGNKISANSLFVSGR* 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2734506 2744265 - Vvi19g220 Vvi19g220 781719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g220 712 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g220 712 SUPERFAMILY Protein kinase-like (PK-like) 125 421 IPR011009 -
Vvi19g220 712 MobiDBLite consensus disorder prediction 611 626 - -
Vvi19g220 712 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g220 712 PANTHER CELL DIVISION PROTEIN KINASE 1 693 - -
Vvi19g220 712 MobiDBLite consensus disorder prediction 12 42 - -
Vvi19g220 712 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Vvi19g220 712 MobiDBLite consensus disorder prediction 425 539 - -
Vvi19g220 712 MobiDBLite consensus disorder prediction 482 496 - -
Vvi19g220 712 MobiDBLite consensus disorder prediction 434 468 - -
Vvi19g220 712 CDD STKc_CDK9_like 131 415 - -
Vvi19g220 712 PANTHER CYCLIN-DEPENDENT KINASE 1 693 - -
Vvi19g220 712 MobiDBLite consensus disorder prediction 611 640 - -
Vvi19g220 712 Coils Coil 671 698 - -
Vvi19g220 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vvi19g220 712 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Vvi19g220 712 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Vvi19g220 712 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g293 Vvi19g220 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76419 PF00069 Pkinase 5.60E-68 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g220 - - vvi:100250348 1430.23