Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g226 ATGGCCGGGAGATCAGGCCACGATTCCTCCATGATCGTCACCAACACCCCAGCTAGAGATCTCGTCCACACCAATTTCGCCTACTGCTCCCCCTCCGATCTCCGCAAGTTCGCCGTTCATGGATCCAATCTCGCTCTCGCATCGGTTGGGGATTCATGCATGTTTATATATACTGCCCATGAGAGCATTCCTAATGGTCATATTGCTCTTAATGCTATCCAACGTCGCCATGCGAGAGTTTCTACGGGGGACTCAGTATCTGTGAGCAGATTTATCCCACCTGATGACTTCAACCTAGCATTGCTCACTCTGGAGTTGGAGTTTGTGAAAAAAGGGACTAAAGATGAACAGATTGATGCTGTTCAGTTGTCTCAGCAACTTAGGAAGAGATTTATTAACCAGGTTATGACAACAGGACAGAGGGTAACATTTGAGTATCATGGCAATGGTTATATTTTCACAGTTAATCAGGCGGTCATAGAAGGGCAAGAAAAATCAAAAGGTATTGAAAGAGGGATAATTGCAGCTGAAACGTATATTATTTTTGAAGCACCAAATTCCAGTGGAATAAAGATTGTGAACCAGCGGGAGGCTGCTAGTAGCAACATCTTTAGGCAGAAAGAGTTTAATCTCCAGTCACTCGGTATAGGTGGTCTAAGTGCAGAGTTTGCGGATATATTTCGAAGAGCTTTTGCCTCTAGAGTTTTTCCTTCCCATGTGACCAGCAGACTAGGCATCAAGCATGTCAAGGGAATGCTGCTTTATGGACCTCCTGGTACTGGGAAGACACTAATGGCTCGCCAGATTGGAAAGATGTTAAATGGCAGGGAACCAAAGATTGTGAATGGGCCTGAAGTGCTAAGTAAGTTTGTTGGTGAAACTGAGAAGAATGTTAGAGATTTATTTGCTGATGCCGAGAATGACCAAAGAACTCGCGGTGATCAAAGTGACTTGCATGTTATCATTTTTGATGAAATTGATGCAATTTGTAAGTCAAGAGGTTCCACTAGAGATGGTACTGGGGTTCATGATAGCATTGTTAACCAGCTCCTTACAAAGATAGATGGTGTCGAGTCTTTGAATAACGTTTTGCTCATCGGAATGACTAACAGAAAGGATTTGCTGGATGAAGCACTTCTGAGGCCTGGACGTTTGGAGGTTCAAGTGGAGATAAGCCTCCCTGATGAGAATGGTCGTTTACAAATTCTTCAAATTCATACAAACAAAATGAAAGAAAATTCTTTTCTCGCTCCAGATGTGAACTTGCAAGAGCTTGCTGCTCGGACAAAGAACTATAGTGGGGCAGAGCTTGAAGGCGTTGTAAAAAGTGCAGTATCATTTGCTTTGAATCGGCAACTAAGCATGGATGATCTTACTAAGCCAGTGGATGAGGAGAGTATAAAAGTCACCATGGAGGATTTTCTGAATGCCCTCCAAGAGATTATTCCTGCATTTGGAGCCTCCACAGATGACCTTGAACGGTGCAGAGTTAATGGCATGGCTGAATGTGGGTCACGACATGAGCACATATATCAAAGAGCCATGCTGTTGGTGGAGCAAGTAAAAGTGAGCAAAGGAAGCCCACTTATTACCTGTCTTCTGGAAGGCCCAAGTGGCAGTGGTAAGACTTCACTGGCAGCTACTGTTGGTATTGACAGTGATTTCCCCTATGTCAAGATTATTTCTGCAGAATCAATGATTGGCCTTAGCGAAAGCAGTAAATGTGCAAGGATTGTCAAGGTATTTGAGGATGCTTATAAGTCACAATTAAGCATTATTGTTCTTGATGACATTGAAAGGTTAATAGAGTATGTTGCAATCGGTCCTCGTTTTTCAAATATAATTTCTCAAACACTGTTGGTCCTCATCAAGCGGCTTCCTCCAAAGGGCAAAAACGTGTTAGTGATCGGGACAACAAGCGAAGTGTCTTTCTTAGATTCAGTTGGCATTCGTGATGCTTTCTCTGTCACATACCATGTTCCAACATTAAAGACAGAAGATGCTAAAAAGGTGTTACAACAGCTAAATGTTTTCTCAGATGATGACATCGATTCTGCTGCAGAGGCCCTGAATGATATGCCAATCAAGAAACTGTACATGTTAATTGAAATGGCCGCCCAGGGAGAACATGGTGGGGAGGCTGAGGCCATTTATTCAGGCAAAGAAAAAATCGCAATCTCTCATTTCTTTGATTGCCTTCAAGACATGATCCGATATTAG 2220 42.97 MAGRSGHDSSMIVTNTPARDLVHTNFAYCSPSDLRKFAVHGSNLALASVGDSCMFIYTAHESIPNGHIALNAIQRRHARVSTGDSVSVSRFIPPDDFNLALLTLELEFVKKGTKDEQIDAVQLSQQLRKRFINQVMTTGQRVTFEYHGNGYIFTVNQAVIEGQEKSKGIERGIIAAETYIIFEAPNSSGIKIVNQREAASSNIFRQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPSHVTSRLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGREPKIVNGPEVLSKFVGETEKNVRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSMDDLTKPVDEESIKVTMEDFLNALQEIIPAFGASTDDLERCRVNGMAECGSRHEHIYQRAMLLVEQVKVSKGSPLITCLLEGPSGSGKTSLAATVGIDSDFPYVKIISAESMIGLSESSKCARIVKVFEDAYKSQLSIIVLDDIERLIEYVAIGPRFSNIISQTLLVLIKRLPPKGKNVLVIGTTSEVSFLDSVGIRDAFSVTYHVPTLKTEDAKKVLQQLNVFSDDDIDSAAEALNDMPIKKLYMLIEMAAQGEHGGEAEAIYSGKEKIAISHFFDCLQDMIRY* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2793367 2811295 - Vvi19g226 Vvi19g226 781725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g226 739 CDD AAA 250 393 - -
Vvi19g226 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 703 IPR027417 -
Vvi19g226 739 SUPERFAMILY ADC-like 10 91 IPR009010 -
Vvi19g226 739 Gene3D - 203 393 IPR027417 -
Vvi19g226 739 Gene3D - 394 481 - -
Vvi19g226 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 491 IPR027417 -
Vvi19g226 739 CDD AAA 533 646 - -
Vvi19g226 739 Pfam AAA+ lid domain 419 474 IPR041569 -
Vvi19g226 739 Pfam ATPase family associated with various cellular activities (AAA) 533 660 IPR003959 GO:0005524|GO:0016887
Vvi19g226 739 Pfam ATPase family associated with various cellular activities (AAA) 252 392 IPR003959 GO:0005524|GO:0016887
Vvi19g226 739 Gene3D - 490 661 IPR027417 -
Vvi19g226 739 Pfam Cell division protein 48 (CDC48), domain 2 117 160 IPR004201 -
Vvi19g226 739 Gene3D - 8 91 - -
Vvi19g226 739 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Vvi19g226 739 SUPERFAMILY Cdc48 domain 2-like 94 197 IPR029067 -
Vvi19g226 739 SMART AAA_5 248 395 IPR003593 -
Vvi19g226 739 SMART AAA_5 528 664 IPR003593 -
Vvi19g226 739 PANTHER VESICULAR-FUSION PROTEIN NSF 1 38 IPR039812 GO:0016887|GO:0035494
Vvi19g226 739 PANTHER VESICULAR-FUSION PROTEIN NSF 62 739 IPR039812 GO:0016887|GO:0035494
Vvi19g226 739 PANTHER BNAA03G50350D PROTEIN 1 38 - -
Vvi19g226 739 PANTHER BNAA03G50350D PROTEIN 62 739 - -
Vvi19g226 739 Gene3D - 95 192 - -
Vvi19g226 739 SMART CDC48_N_2 10 93 IPR003338 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g226 K06027 NSF, SEC18; vesicle-fusing ATPase [EC:3.6.4.6] - vvi:100243494 1423.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g226 . . . . . Bpe02g01904 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006415 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 38