Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g242 ATGTTTGCAATTCACTTTTCTTCTCATTTTCTTTGGCGATTTTTCTTTGTTGTTGGTGTGGTTTTGGAGGGGATTGGTCATGGGTTGGCCGATGGGTGGTTCGACGCTCATGCCACTTTTTATGGGGCCAATCAAAGCCCCTCCACCCTTGGAGGAGCTTGCGGTTATGATAACACAGTCCATGCTGGGTTTGGAGTCAACACAGCAGCAGTGAGTGGCGCGTTGTTTAGACAAGGCGAGGCCTGCGGCGCCTGCTACCTGGTCATGTGCAACTACTGGCTCGACCCCAAGTGGTGTCTCCACCGCGCCACTGTCACTATCACCGCCACCAACTTCTGCCCTCCCAACAACAACGGCGGCTGGTGTGATCCTCCTCGTCAGCATTTCGACATGTCCATGCCCGCCTTCCTTCGCATGGCTAGACAGGGCAACGAAGGCATAGTTCCAGTACTTTACAAAAGGATATCATGTAAAAGGAGGGGCGGAGTCCATTTCACATTGAAGGGACAATCGAACTTCAACATGGTGATGATCTCGAACGTGGGCGGTAGCGGAGACGTGAGGGCGGCGTGGATAAGAGGGTCGAGGACGGGGACATGGGTGGCCATGCACAGAAACTGGGGTGCAAACTGGCAGAGCAGCGTGGATCTTAGGAGCCAAAACCTTTCCTTCAAGCTCACTTTGGTCGATGGAAAGACACTGGAATTCTATAACGTCGTGCCTTCAACATGGAGCTTTGGACAGACTTTTGCTTCAGAGAATCAGTTCACTTAG 774 52.33 MFAIHFSSHFLWRFFFVVGVVLEGIGHGLADGWFDAHATFYGANQSPSTLGGACGYDNTVHAGFGVNTAAVSGALFRQGEACGACYLVMCNYWLDPKWCLHRATVTITATNFCPPNNNGGWCDPPRQHFDMSMPAFLRMARQGNEGIVPVLYKRISCKRRGGVHFTLKGQSNFNMVMISNVGGSGDVRAAWIRGSRTGTWVAMHRNWGANWQSSVDLRSQNLSFKLTLVDGKTLEFYNVVPSTWSFGQTFASENQFT* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3020094 3021255 + Vvi19g242 Vvi19g242 781741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g242 257 Pfam Lytic transglycolase 68 152 IPR009009 -
Vvi19g242 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Vvi19g242 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Vvi19g242 257 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Vvi19g242 257 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Vvi19g242 257 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Vvi19g242 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vvi19g242 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vvi19g242 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Vvi19g242 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Vvi19g242 257 SUPERFAMILY Barwin-like endoglucanases 32 180 IPR036908 -
Vvi19g242 257 PANTHER EXPANSIN-A15 4 256 IPR002963 GO:0009664
Vvi19g242 257 PANTHER EXPANSIN-A12 4 256 - -
Vvi19g242 257 SMART dpbb_1 68 152 IPR007112 -
Vvi19g242 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vvi19g242 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vvi19g242 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Vvi19g242 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vvi19g242 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Vvi19g242 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vvi19g242 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Vvi19g242 257 Gene3D - 26 158 IPR036908 -
Vvi19g242 257 Gene3D - 162 257 IPR036749 -
Vvi19g242 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Vvi19g242 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g242 - - vvi:100260630 554.288