Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g243 ATGGCTTCATCCATCTTCAACAGACTCAAATCAAACCGTCACGTCTCTCAAACCCTCATTTCCAATGTGTGCTCGGTCAGATCAGTTTACACTGGAAGGTTTGCCAATATAAACCTCTATTCCCGAATCAGCCCTCTCGGTACCCCCAATTTGAGTCTTGTTCCAGTGCTTGATCAATGGGTGGAGGAGGGGAAAAAGGTCAGAGACGTCGAGCTTCACCGCATTATTCGCGATCTCCGCTCCCGGAAGCGCTACGCGCAGGCCTTGGAGGTTTCAGAGTGGATGAGTAGCAAGGAGCTCTGTCCATTTTCACCAAGTGCTCGTGCTGTGCAGTTGGATCTGATTGGTCAGGTCCGTGGGCTGGAATCTGCTGAGAACTACTTTAATAACATGAGTGCTGAAGAGAAAATTGACAAAATGTATGGTGCTCTGCTGAACTGTTATGTCAGAGAACGTGTCATTGATAAGTCCCTCTCCCATTTGCAGAAGATGAAGGAGTTGGGTTTTGCTTCCACTCCTCTCCCATACAATGGCCTTATGTGCCTCTATATAAATACTGACCAGCTTGAGAAAATCCCTGATGTGTTGTCAGAGATGCAGGAGAATGGTATTTCCCCTGATAACTTCAGTTATAGACTCTGCATAAACTCTTATGGAGCACGATCTGATCTGAACAGCATGGAGAAGATCCTTGAAGAAATGGAGAGCAAATCCCATATTCACATAGACTGGATGACTTATTCCATGGTGGCTAATTTCTACATAAAAGCAGGTCTTAATGAGAAGGCACTCTTTTTTCTGAAGAAAGCTGAAACAAAGTTACATAAAGATCCACTTGGCTACAATCATTTGATTTCACTATATGCAAGTCTCGGGAGTAAAGCTGAGATGATGAGATTGTGGGAACGTAGAAAAACTGCTTCTAAGAAGCTAATTAATCGAGATTATATAACCATGCTGGGATCTTTAGTAAAACTTGGTGAGCTCGAAGACACTGAGGCCTTGCTTAAGGAGTGGGAGTCATCTGGCAACTGTTATGATTTTCGAGTGCCTAATACACTTCTTATTGGGTTCTGCCAGAAGGGGTTAATTGAAAAAGCTGAATCAATGCTTAGAGACATTGTTGAGGAAGGGAAGACTCCAACTCCAAACAGTTGGAGTATTGTTGCAGCAGGCTATATTGAAAAGCAGAATATGGAGAAGGCCTTTGAGTGCATGAAGGAAGCCATAGCTGTGCTTGCAGAAAACAAAGGGTGGAGGCCCAAACCTAAAGTGATTTCAAGCATATTGAGCTGGCTTGGTGATAACAGAGATGTTGAAGAAGTAGAAACTTTTGTGAGCGCCTTGAAGGCAGTGATTCCAATGGATAGGGAAATGTATCATGCACAGATTAGAGCAAGTATCAGAGCTGGGAAGGAAGTGGATGGAATTTTAGACAGCATGAAAGCTGATAAAATCGATGAAGATGAAGAAACAAGGAAGATCCTTAGCTTAAAGCACGACAAAGCCGAGAAAAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGGGGCAAAGAAGGGAGCGGTGACGAATTCGTGGGGAAAGTATGGGATTATTCGAGAATCAGATATGTGGAATAAACGACCAGAATTTACTGCATGGTTGGCTGAAATAAAACAGGTGAACCTGGAGAGTCTGCCTAACTGGGAGGAGAAGCAGATGTTCAAAGAATTTATGGAGGACCATAACACAGCTACCTTTACTTCCAAAAAATATTATAATATTGATGCTTATTATAGACAAAAGATGGAAAGGGAAATGAAAAAAGGTTCCAAGAAAGCTCTGGAAACTGAACGTACCGTATTCAATGATGAAGAACAACGACGGTTAGAACTGCAACGAGAACGTGAAAGGTACAAGGAAGTACAAGTGGAAGAATTAAAACGCTCTATGCAGAGTGGAATGGCACAGGCAATGAAAGAGCAAGCTCAGCTCAGGGAAGAGATGGCTTACCAGTACAAAGTTGGCAACTCTGAGGCTGCAGCTGCCATCCAGAGAAGATTGGACCCAGATGTTGCTATGTGA 2064 43.17 MASSIFNRLKSNRHVSQTLISNVCSVRSVYTGRFANINLYSRISPLGTPNLSLVPVLDQWVEEGKKVRDVELHRIIRDLRSRKRYAQALEVSEWMSSKELCPFSPSARAVQLDLIGQVRGLESAENYFNNMSAEEKIDKMYGALLNCYVRERVIDKSLSHLQKMKELGFASTPLPYNGLMCLYINTDQLEKIPDVLSEMQENGISPDNFSYRLCINSYGARSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYIKAGLNEKALFFLKKAETKLHKDPLGYNHLISLYASLGSKAEMMRLWERRKTASKKLINRDYITMLGSLVKLGELEDTEALLKEWESSGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSALKAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSLKHDKAEKKKKKKKKEKEGAKKGAVTNSWGKYGIIRESDMWNKRPEFTAWLAEIKQVNLESLPNWEEKQMFKEFMEDHNTATFTSKKYYNIDAYYRQKMEREMKKGSKKALETERTVFNDEEQRRLELQRERERYKEVQVEELKRSMQSGMAQAMKEQAQLREEMAYQYKVGNSEAAAAIQRRLDPDVAM* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3022708 3035710 + Vvi19g243 Vvi19g243 781742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g243 687 Coils Coil 486 520 - -
Vvi19g243 687 Gene3D Tetratricopeptide repeat domain 50 189 IPR011990 GO:0005515
Vvi19g243 687 Pfam PPR repeat 316 343 IPR002885 -
Vvi19g243 687 Pfam PPR repeat 352 378 IPR002885 -
Vvi19g243 687 MobiDBLite consensus disorder prediction 500 515 - -
Vvi19g243 687 Pfam Pentatricopeptide repeat domain 161 220 IPR002885 -
Vvi19g243 687 PANTHER OS12G0527900 PROTEIN 27 500 - -
Vvi19g243 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vvi19g243 687 Coils Coil 593 613 - -
Vvi19g243 687 Gene3D Tetratricopeptide repeat domain 412 549 IPR011990 GO:0005515
Vvi19g243 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Vvi19g243 687 Coils Coil 615 635 - -
Vvi19g243 687 MobiDBLite consensus disorder prediction 500 519 - -
Vvi19g243 687 Coils Coil 396 416 - -
Vvi19g243 687 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 27 500 - -
Vvi19g243 687 TIGRFAM PPR: pentatricopeptide repeat domain 352 382 IPR002885 -
Vvi19g243 687 TIGRFAM PPR: pentatricopeptide repeat domain 176 207 IPR002885 -
Vvi19g243 687 Gene3D Tetratricopeptide repeat domain 190 314 IPR011990 GO:0005515
Vvi19g243 687 Gene3D Tetratricopeptide repeat domain 315 411 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g243 - - - vvi:100265843 1001.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g313 Vvi19g243 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62