Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g247 ATGTACAATACAAGGCCAAAGCGTGATCGGAAAGGGAAAATTTTGAAGCATGAGCTTCAGTCCAAGGAGTTGCCTTCTACACGAATTCAACCAGATCGCAGATGGTTTGGGAATACTCGAGTTGTAAATCAGAAAGAGCTTGAATTTTTCCGTGAGGAGCTCCAAAGCCGGATGTCAAGTAGCTACAATGTTATCCTGAAGGAGAAGAAACTGCCCATGTCTCTATTAAATGATCACCAGAAGCAAGCACGAGTTCATCTGCTTGATACAGAGCCGTTTGAGGATGCATTTGGACCAAAGAAAAAGAGAATACGACCGAAGCTTATGGCGATGGATTATGAGTCTTTAGTTAAGAAAGCTGATGGTTCTCAGGATGCATTTGAGCAGAAGCATGCTGGCAGTGCGTATGCAGAAGGAAGTGAAGGAGATGGATTCAGGGACCTTGTCCGCCATACAATGTTTGAGAAGGGTCAAAGCAAACGTATCTGGGGTGAGCTCTACAAAGTGATAGACTCTTCAGATGTTGTTGTCCAGGTTTTGGATGCAAGGGATCCACAAGGTACAAGATGCTATCATTTAGAGAAACATTTGAAGGAGCATTGCAAACATAAACACATGATTCTTTTGTTAAACAAGTGTGATTTAATTCCTGCTTGGGCTACAAAAGGATGGCTCAGAGTGTTGTCTAAAGAATTCCCTACTCTAGCTTTCCATGCTAGCATCAACAAGTCTTTTGGCAAGGGTTCTCTTCTATCTGTTTTGAGACAATTTGCCCGCTTAAAAAGTGATAAGCAAGCAATATCTGTGGGATTTGTGGGGTATCCCAATGTTGGAAAATCATCAGTGATCAATACACTGCGAACAAAGAATGTTTGCAAGGTCGCTCCTATTCCAGGGGAAACAAAAGTGTGGCAGTACATTACCCTCACAAAGAGAATCTTCTTGATTGATTGCCCTGGAGTTGTTTACCAAAACAGCGACTCTGAAACAGATGTTGTACTGAAGGGTGTGGTACGTGTCACAAACTTGGAAGATGCTTCTGAACACATAGGAGAAGTTCTGAAACGAGTAAAGAAGGAGCACCTGGAAAGAGCATATAAGATTAAAGACTGGGATGATGAGAATGACTTTCTTGTTCAGCTATGCAAATTAACGGGCAAACTTTTAAAGGGTGGTGAGCCTGACTTGATGACTGTGGCAAAGATGGTCCTCCATGACTGGCAGAGAGGTAGAATCCCCTTCTTCGTTCCCCCTCCAAGGCAGCAGGAAGCTGCTATAAGAGCCATTGCAAATGTTATTTCATCCCAGCAGACTATGAATGTCCCTGTTCAAAAGGATCTTTTCAGTGAGAGAGAGTTGGAAGGTGACAACTCTGAGCTGCCTCGAGTCCTTGACTCATAA 1401 43.11 MYNTRPKRDRKGKILKHELQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQSRMSSSYNVILKEKKLPMSLLNDHQKQARVHLLDTEPFEDAFGPKKKRIRPKLMAMDYESLVKKADGSQDAFEQKHAGSAYAEGSEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKEHCKHKHMILLLNKCDLIPAWATKGWLRVLSKEFPTLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNSDSETDVVLKGVVRVTNLEDASEHIGEVLKRVKKEHLERAYKIKDWDDENDFLVQLCKLTGKLLKGGEPDLMTVAKMVLHDWQRGRIPFFVPPPRQQEAAIRAIANVISSQQTMNVPVQKDLFSERELEGDNSELPRVLDS* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3098249 3107821 - Vvi19g247 Vvi19g247 781746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g247 466 PRINTS GTP1/OBG GTP-binding protein family signature 269 289 IPR006073 GO:0005525
Vvi19g247 466 PRINTS GTP1/OBG GTP-binding protein family signature 315 330 IPR006073 GO:0005525
Vvi19g247 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 396 IPR027417 -
Vvi19g247 466 Gene3D - 153 323 IPR027417 -
Vvi19g247 466 CDD NGP_1 165 321 - -
Vvi19g247 466 Pfam NGP1NT (NUC091) domain 1 125 IPR012971 -
Vvi19g247 466 Gene3D - 324 416 IPR023179 -
Vvi19g247 466 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 163 324 IPR030378 GO:0005525
Vvi19g247 466 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 2 1 441 IPR024929 GO:0005730
Vvi19g247 466 Pfam 50S ribosome-binding GTPase 269 355 IPR006073 GO:0005525
Vvi19g247 466 PANTHER GTP-BINDING PROTEIN-RELATED 1 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g247 K14537 NUG2, GNL2; nuclear GTP-binding protein - vvi:100246891 903.279
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g247 . Blo03g01541 . Bda09g00500 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0136 Cone9ag0161 . . . . . . . . . . . . Bma07g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006194 1 2 1 2 0 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 2 1 5 1 1 37