Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g248 ATGGAGCGGGCGCTCAAAGCTGCACGAGCCTCTGGTTCACTCAACCTATCCAATCGCGCTCTCAGGGAAGTGCCCGATGAGGTATACAGAAGTCTGGATGCAATCGGGGAGGGGGAAAAGTGGTGGGAGGCTGTGGAATTACAAAAGCTTATTTTGGCCCATAATGATATCGAATCATTGAGAGAAGACTTGAAAAATTTATCCCTGTTGTCTGTGTTGAATCTTAGTAACAACAAGCTTGTCCACCTTCCAGCTGCTATTGGAGAGCTCCCCATGCTAAAATCATTGGATTTGTCACAAAACTCAATTGTTGATATTCCTGAAGTGATCGGATCAGCAACTTCTCTTGTCAAGCTTGACTGTTCAAACAACAAACTTAAGGATCTCCCAAATTCCCTCGGAAGATGTTCAAATTTATTAGAACTCAAGGCATCAAACAATTGTATTACCAGCTTACCTGAAGATCTGGCTCACTGTTTAAAGTTAATCAAACTAGATGTGGAGGGGAACAAGTTAACAATGCTATCTGAGAACATGATTGCATCATGGGTCCTTCTTACAGAACTTAATGCATCAAGAAACTTGTTGACTGGCTTGCCAGAGAATATTGGAAGGCTTTCACGTCTCATTCGTCTTGACTTTCATCAGAACAGAATTTCATCAATACCAGCATCAATAAAGGGCTGCTGTTCCCTTGCAGAGTTCTATATGGGGAATAATGTGTTGTCTTCGCTAACAGCAGAGATTGGGGCACTTTCTCTTTTAGGGACATTAGATCTTCACTCAAACCAGTTAAAGGAGTATCCTGTGGAGGCATGCAAGCTCCGTCTTCAAGTCCTAGATTTGTCAAATAATTCATTGTCTGGCTTGCCCCCTGAGATTGGTATGATGACAACTCTTCGAAAACTTGTGCTCACTGGCAATCCTCTGCGAACTCTTCGAAGCTCATTGGTGTCTGGACCTACACCTGCTTTGTTGAAGTTTCTGCGCAGTAGACTCTCTACAGATGAAGATTCTGAAGCTGCTACTACAGCAAAAGAGAATGTAGTCACCATGGCAGCTCGAATATCTATTACTTCAAAGGAACTTTCTTTGGAAGGTATGGGTTTGAGTGCTGTCCCAGCACAGGTATGGGAGTCGAGTGAAATTGTGAAAGTTGATCTTTCTAGGAATTCAATTCAAGAACTTCCACCCGAACTTACCTCATGTGTTTCCCTCCAGGCTTTGATTTTATCCAGGAACAAGATTCAAGAATGGCCAGGTGTAATTTTAAAGTCACTTCCTAACCTTTCATGCTTGAAGCTGGACAATAATCCACTCAGACAGATTCCAGCAGATGGATTTCAAGCTGTCTCCAAGCTCCAGATTCTGGATCTAAGTGGTAATTCAGCTTCATTACCGGACAATCCAGCGTTTTCTAGCTTACCTCAGTTACAGGAACTTTACCTGAGGCGAATGCAGCTATGTGAAGTCCCATCAGATATATTGAGCTTACAGCAACTGCAGATCCTCGACTTGAGCCAAAATTCCCTTCAATTGATTCCAGAGGGATTCAAAAATCTTACATCTCTTACCGAGCTTAACTTGTCTGACAATAGCATTGCAACACTTCCCCCAGAACTGGGATTGCTTGAACCCAGTCTACAGGCCTTACGACTTGATGGAAACCCATTGAGGAGCATCCGGAGGACAATTTTGGATAGAGGAACCAAAGCTGTTCTAAAATATTTGAAGGACAAAATTCCAGAGCACTAA 1755 42.85 MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESLREDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLDCSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMIASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNNVLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTLRKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSEAATTAKENVVTMAARISITSKELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKIQEWPGVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLPQLQELYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIATLPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEH* 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3110459 3131353 + Vvi19g248 Vvi19g248 781747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g248 584 SUPERFAMILY L domain-like 361 559 - -
Vvi19g248 584 SUPERFAMILY L domain-like 43 320 - -
Vvi19g248 584 PANTHER LRR RECEPTOR-LIKE KINASE 136 583 - -
Vvi19g248 584 PANTHER LRR RECEPTOR-LIKE KINASE 13 138 - -
Vvi19g248 584 Gene3D Ribonuclease Inhibitor 178 270 IPR032675 -
Vvi19g248 584 Gene3D Ribonuclease Inhibitor 467 580 IPR032675 -
Vvi19g248 584 Gene3D Ribonuclease Inhibitor 84 177 IPR032675 -
Vvi19g248 584 Gene3D Ribonuclease Inhibitor 330 466 IPR032675 -
Vvi19g248 584 Gene3D Ribonuclease Inhibitor 271 329 IPR032675 -
Vvi19g248 584 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515
Vvi19g248 584 SMART LRR_typ_2 252 275 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 404 426 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 206 229 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 521 544 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 546 568 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 297 320 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 114 136 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 67 88 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 498 520 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 276 296 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 381 403 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 45 66 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 475 497 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 427 450 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 137 159 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 90 113 IPR003591 -
Vvi19g248 584 SMART LRR_typ_2 161 182 IPR003591 -
Vvi19g248 584 ProSiteProfiles Leucine-rich repeat profile. 46 68 IPR001611 GO:0005515
Vvi19g248 584 Gene3D Ribonuclease Inhibitor 5 83 IPR032675 -
Vvi19g248 584 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515
Vvi19g248 584 Pfam Leucine rich repeat 500 558 IPR001611 GO:0005515
Vvi19g248 584 Pfam Leucine rich repeat 255 310 IPR001611 GO:0005515
Vvi19g248 584 Pfam Leucine rich repeat 428 485 IPR001611 GO:0005515
Vvi19g248 584 SMART LRR_bac_2 521 541 - -
Vvi19g248 584 SMART LRR_bac_2 136 155 - -
Vvi19g248 584 SMART LRR_bac_2 498 517 - -
Vvi19g248 584 SMART LRR_bac_2 184 202 - -
Vvi19g248 584 SMART LRR_bac_2 67 86 - -
Vvi19g248 584 SMART LRR_bac_2 90 109 - -
Vvi19g248 584 SMART LRR_bac_2 113 132 - -
Vvi19g248 584 SMART LRR_bac_2 451 469 - -
Vvi19g248 584 SMART LRR_bac_2 159 178 - -
Vvi19g248 584 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515
Vvi19g248 584 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 13 138 - -
Vvi19g248 584 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 136 583 - -
Vvi19g248 584 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Vvi19g248 584 ProSiteProfiles Leucine-rich repeat profile. 138 160 IPR001611 GO:0005515
Vvi19g248 584 PRINTS Leucine-rich repeat signature 277 290 - -
Vvi19g248 584 PRINTS Leucine-rich repeat signature 498 511 - -
Vvi19g248 584 ProSiteProfiles Leucine-rich repeat profile. 115 136 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g248 - - - vvi:100252026 1089.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33