Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g251 ATGCAAATTTTAAGGATAATGATGGAGGAAAATTTGGTGCACAACGAGAGTGTGGAGGAGGAAGAAGAAGAGTATGTATTGCTGAATCTGGATGAGGTTAGAGGCCAAGTTGATATCCCACCAAATGCCCCATATGTTCTATCCGGTCTAGACACGCCAAACCCAATATTGGTTATAGGCGACAGCTTGAAGCTGATTGGGGAATATGAAGAAACAATTGGTACATGCTTGGTTTTCTCAGAAGGCCAGGCCACCCCTGTGGTTCATGAAGAGACGGGACCATCTGAAGCAAATCTTTTTTCAGGCACATTCATAATAGATCCTAATCAAGCTCCAGCCAAGGAAGTTAAACCGATTGCTAGCCTCCAGAAGATTTTGAGGTTTAGACTATTACACGAAGGTGATGTTCAAGATGCAACTTCTGAACCTGTTGATATTTGA 441 42.63 MQILRIMMEENLVHNESVEEEEEEYVLLNLDEVRGQVDIPPNAPYVLSGLDTPNPILVIGDSLKLIGEYEETIGTCLVFSEGQATPVVHEETGPSEANLFSGTFIIDPNQAPAKEVKPIASLQKILRFRLLHEGDVQDATSEPVDI* 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3246770 3250280 - Vvi19g251 Vvi19g251 781750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g251 146 Pfam TFIIIC subunit triple barrel domain 19 128 IPR019481 -
Vvi19g251 146 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED 8 138 IPR042771 GO:0006383
Vvi19g251 146 Gene3D - 11 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g251 K15203 GTF3C6; general transcription factor 3C polypeptide 6 - vvi:100257155 205.297
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g251 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012850 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 0 0 1 1 1 3 1 1 26