Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g259 ATGGCAGACAGATTCTTCCCAAACGAAATGCCGGAGACGGCAGTGGAAGCGGAGGAAACAAGCGCTCAAAACAGTGGAGACTCTCTGATAAAGCTCCTCTCTTTTCCATACGAAACTCTCTCCCAACAATTCGAGCGAGCTGCTTTGGATGTCAAAGACGCTGTTGTCAGGGAGACATGGGCGCTTGCTGGAAAACGCGTACAGGACTATGCTTTGTATACTGGGGCTCTTGGGACTGCGTTTTTGCTCTTCAAGGCCTATCAGATTACTAACAACAGGGATGATCTTAATGTTTGTTCCGAGATTGTCAAGGCTTGTGATTCTGCTTCCGCCACCTCTGGGCGTGTGACATTCATATGTGGGCAAGCTGGTGTTTATGCTATTGGTGCTGTTGCGGCTAAGCATGCTGGGGATGAAAGATTGCTTGGTCGCTACTTAACTCAATTTAAAGAGATTAAGCTTCCTAAGGATTTGCCAAATGAGTTACTATATGGGCGAGGAGGGTTCTTATGGGCATGCTCATTCTTAAATAAGCATATTGGTAAAGACACAATATCTTCTGCTCGCATGAGAGCTTCTGTGAAGGAAATTATCAAGTCGGGTAGAGAAATGGCAAAAAGGGAAAGATGCCCATTGATGTATGAATGGCACGGGAAGAAGTATTGGGGTGCTGCCCATGGGTTAGCGGGGGTTATGCATGTTTTGATGCACATGGAACTGAAACCAGACGAGGTGGAGGATGTCAAGGGTACCTTGCGTTATATGATCAAGAACCGTTTCCCCAGTGGGAATTATCCTTCAAGTGAAGGAAGTGAATCTGACCGCCTTGTGCATTGGTGTCATGGTGCTCCTGGTGTTGCTCTTACCCTTTTGAAAGCAGCTGAGGTTTTTGGAGACAAGGAGTTTCTGCAAGCAGCTGTGGATGCAGGGGAGGTGGTATGGAACAGAGGCCTGCTTAAGCGAGTTGGGATTTGTCATGGCATCAGTGGGAATACCTATGTGTTTCTTTCACTCTACAGACTGACTGGTAATGTGGAGTTCTTGTACAGGGCCAAAGCATTTGCTTGTTTTTTACTCGACAGGGCCCAAAGGCTTATATCAGAGGGGAAGATGCATGGAGGTGATCGCCCTTATTCACTATTTGAAGGCATTGGAGGAATGACTTATCTGTTTCTGGACATGATCGAACCATCTGAGGCCAGGTTCCCAGGTTATGAACTTTAG 1224 46.73 MADRFFPNEMPETAVEAEETSAQNSGDSLIKLLSFPYETLSQQFERAALDVKDAVVRETWALAGKRVQDYALYTGALGTAFLLFKAYQITNNRDDLNVCSEIVKACDSASATSGRVTFICGQAGVYAIGAVAAKHAGDERLLGRYLTQFKEIKLPKDLPNELLYGRGGFLWACSFLNKHIGKDTISSARMRASVKEIIKSGREMAKRERCPLMYEWHGKKYWGAAHGLAGVMHVLMHMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLLKAAEVFGDKEFLQAAVDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGNVEFLYRAKAFACFLLDRAQRLISEGKMHGGDRPYSLFEGIGGMTYLFLDMIEPSEARFPGYEL* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3289701 3292924 + Vvi19g259 Vvi19g259 781758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g259 407 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Vvi19g259 407 PRINTS Eukaryotic LanC-like protein family signature 210 222 IPR020464 -
Vvi19g259 407 PRINTS Eukaryotic LanC-like protein family signature 256 271 IPR020464 -
Vvi19g259 407 PRINTS Eukaryotic LanC-like protein family signature 293 314 IPR020464 -
Vvi19g259 407 PRINTS Eukaryotic LanC-like protein family signature 393 407 IPR020464 -
Vvi19g259 407 PANTHER LANC-LIKE PROTEIN GCL2 1 407 - -
Vvi19g259 407 Gene3D - 1 407 IPR012341 GO:0005975
Vvi19g259 407 PANTHER LANC-LIKE PROTEIN 1 407 - -
Vvi19g259 407 SMART LANC_like_2 66 407 IPR007822 -
Vvi19g259 407 CDD euk_LANCL 72 403 - -
Vvi19g259 407 Pfam Lanthionine synthetase C-like protein 67 407 IPR007822 -
Vvi19g259 407 PRINTS LanC-like protein superfamily signature 69 87 IPR007822 -
Vvi19g259 407 PRINTS LanC-like protein superfamily signature 160 175 IPR007822 -
Vvi19g259 407 PRINTS LanC-like protein superfamily signature 221 237 IPR007822 -
Vvi19g259 407 PRINTS LanC-like protein superfamily signature 276 296 IPR007822 -
Vvi19g259 407 PRINTS LanC-like protein superfamily signature 322 335 IPR007822 -
Vvi19g259 407 PRINTS LanC-like protein superfamily signature 377 394 IPR007822 -
Vvi19g259 407 SUPERFAMILY LanC-like 67 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g259 - - - vvi:100250470 826.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g343 Vvi19g259 ECH
Vvi12g683 Vvi19g259 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g259 . Blo03g01538 . Bda09g00498 . Bpe08g01031 . . . . Cma01g01198 . Car01g01023 . Sed01g0663 . Cpe02g00711 Bhi09g03396 Tan01g4417 Cmetu07g0753 . Hepe01g1372 Mch11g1087 . Cla11g01777 Cam11g1841 Cec11g1862 Cco11g1872 Clacu11g2003 Cmu11g1812 Cre11g2220 Cone6ag0132 Cone9ag0157 . . Lsi04g01320 Csa04g02360 Chy07g00089 . . . . . . . Bma07g01188 . . Cmo01g01252 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002987 1 1 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 2 2 2 2 2 2 4 4 3 49