Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g260 ATGGCTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTTCAGACCATGTCAAGGCTGACTTCAGCTCTTCTGCATTGAGGAACAAGAGAAAACCATCCGTTGGAGCTATCAGAGCCCAGACCGCAGCTACAACTCCGGCCATCACCCGGGCTACACCAGAAGGGAAAAAAACTCTAAGAAAGGGAACTGTTGTGATCACCGGAGCCTCATCTGGACTGGGTCTAGCCACAACCAAGGCTCTGGCTGAAACAGGGAAATGGCACATCATTATGGCCTGCAGGGACTTCCTAAAAGCCGAAAGAGCTGCAAGGTCAGCCGGCCTTTCTAAGGAAAACTATACCGTAATGCACCTAGACCTTGCCTCACTTGACAGTGTCCGGCAATTTGTTGATAACTTCAAGCGATCAGAACGGCCCCTTGATGTTCTGGTCTGCAATGCTGCTGTCTACCTTCCAACTGCTAAGGAGCCTACATTCACTGCTGATGGGTTTGAGCTTAGCGTTGGAACTAACCATCTTGGGCACTTCCTTCTCGCCCGGTTGCTGCTTGATGATTTGAAGCAATCTGATTACCCATCAAAGCGTCTCATTATCGTTGGTTCAATTACAGGGAACACAAATACCTTGGCTGGAAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGAATGGCAGGAGGTCTAAATGGGCTGAACAGCTCAGCCATGATTGATGGTGGAGCTTTTGACGGTGCCAAGGCATACAAGGACAGCAAGGTATGCAACATGCTCACCATGCAAGAGTTCCACCGCCGATACCACGAGGACACTGGCATCACCTTCGCCTCCCTCTACCCAGGTTGCATTGCTACAACTGGCTTGTTTAGGGAGCATATTCCCTTGTTCAGGCTTCTTTTCCCTCCATTCCAGAAGTTCATTACCAAGGGCTATGTCTCCGAGGAAGAATCTGGAAAAAGACTTGCACAGGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATGCAGACAAGGCTCGTAAGGTTTGGGAACTTAGCGAGAAACTTGTCAGATTGGCTTAA 1191 49.62 MAMQAAALVPSAFSIPKEGKGSASFKESGLFGVSLSDHVKADFSSSALRNKRKPSVGAIRAQTAATTPAITRATPEGKKTLRKGTVVITGASSGLGLATTKALAETGKWHIIMACRDFLKAERAARSAGLSKENYTVMHLDLASLDSVRQFVDNFKRSERPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLARLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGMAGGLNGLNSSAMIDGGAFDGAKAYKDSKVCNMLTMQEFHRRYHEDTGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGYVSEEESGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDADKARKVWELSEKLVRLA* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3298277 3300519 - Vvi19g260 Vvi19g260 781759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g260 396 Pfam short chain dehydrogenase 85 228 IPR002347 -
Vvi19g260 396 PANTHER - 1 394 IPR005979 GO:0016630
Vvi19g260 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 364 IPR036291 -
Vvi19g260 396 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 394 - -
Vvi19g260 396 Gene3D - 71 395 - -
Vvi19g260 396 MobiDBLite consensus disorder prediction 54 76 - -
Vvi19g260 396 PRINTS Glucose/ribitol dehydrogenase family signature 85 102 IPR002347 -
Vvi19g260 396 PRINTS Glucose/ribitol dehydrogenase family signature 160 171 IPR002347 -
Vvi19g260 396 PRINTS Glucose/ribitol dehydrogenase family signature 293 310 IPR002347 -
Vvi19g260 396 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 82 396 IPR005979 GO:0016630
Vvi19g260 396 CDD LPOR_like_SDR_c_like 83 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g260 K00218 por; protochlorophyllide reductase [EC:1.3.1.33] - vvi:100255647 748.814
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g350 Vvi19g260 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g260 Blo03g00643 Blo03g01537 Bda07g00287 . . Bpe08g01033 . . . . Cma01g01197 . Car01g01022 Car09g00792 Sed05g2572 Cpe06g00703 Cpe02g00712 Bhi09g03395 Tan01g4418 Cmetu07g1898 . Hepe01g1371 Mch11g1088 . . . . . . . . Cone6ag0131 Cone9ag0156 Cone14ag1074 Cone15ag1067 Lsi04g01319 Csa04g02361 Chy07g00090 . . . . . Bpe11g00490 . Bma07g01189 . . Cmo01g01251 Cmo09g00869 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003266 1 2 1 1 2 1 3 1 1 2 1 0 2 2 1 3 0 4 3 1 1 2 2 2 2 1 2 2 2 2 50