Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g261 ATGAGCAAAGCCGGCGACGAAGACGACGACGACGAGTGTTTCTACGAGTCTCTCGATCGGGTCCTCTCGTCCTCCTGCTCCTGTTCCTCCTCCAACTCCGATGATGATGCGGATCCGAATGCCTCGCCCAATTATGCTTCCGAGCACCCCTTTCCCATCCCCAAATTCCCCATTGGTGCTTCCAAATACGATATCTGGATCTCCGAGCCTTCCTCCATTGAAGAGCGCCGTTCGCGTCTTCTTCGCGAAATGGGCCTTAGCAACGACCCGTCTCTGTCCCGGGTGAAACCCACCGCTGATCGAAGCAACGGCGATATTGGCCGATCGGTTTCTAGTGGAAGTAATGGATCTCCGATTGCCAATGCTGCTTCTGCTTCGCCCAATAAGCCTCCCACCGGAAAAATGTGTAGGCGGGTGGATGAAACTAGGGGTGATTCCACAAAATCGGAGCCTAGTTTTGTCCCTCATGACCAAGTATGCACAATTAAGAATCTTGATAATGGGAAGGAGTTTGTTGTGAATGAGCTTAGGGAAGATGGTATGTGGAACAAGCTTAAGGAAGAGGGTAATAAGGATAATTTGGATATAAATGTTAATGGGGGTGTTGGGGGTGGATCGAAGTTGAAAAAGAAAGGGGGTTGGTTCAAGAGCATCAGGAGTGTTGCTAGTTCGGTGACTGGGCATAGAGAGAGACGGAGTAGTGATGAGCGGGATACATCGTCTGAGAAGGGTGGGCGGAGGTCGAGTTCTGCCACAGATGATAGCCAGGAGGTTTCATTCCATGGTCCAGAGAGAATTAGGGTTCGGCAGTATGGGAAGTCATGCAAAGAGCTTACTGCACTTTATAAGAGCCAGGAGATACAAGCCCATAATGGGTCAATTTGGAGTATTAAGTTTAGTTTGGATGGCAGGTATCTTGCAAGTGCAGGTGAGGATTGTGTTATTCATGTGTGGCAGGTTGTTGAAACTGAGAGGAAAGGGGATCTATTGACAGAGAAACCAGAAGATGGGAATTTGAATCTTTTGTTTGTGGCCAGTGGATCCCCAGAACCAACTTCAATGTCACCAAATGTGGACAACAATTCATCAGAAAAAAAGAGGAGGGGGAGGTCATCTGTAAGCCGGAAATCAGTGAGTTTGGACCACATTAAGGTGCCAGAGACTGTGTTTGGGCTTTCAGAAAAGCCTTTTTGTTCATTCCAAGGACATGGTGATGATGTGCTTGACCTTTCATGGTCCTCCAAGTCTCAGCAACTGCTCTCATCTTCAATGGACAAAACAGTTCGGTTGTGGCACTTGTCTAGCAAGTCCTGCTTGAAAATATTCTCACACAGTGATTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCCCTTGATGCTAAGGTTCGCATTTGGAGCATACCCGATCGTCAAGTTGTTGATTGGAATGATCTGCATGAGATGGTCACTGCTGCCTGCTATACTCCAGATGGTCAGGGTGCATTAGTTGGGTCATACAAAGGGAGCTGTAGATTATACAACACATCTGAAAATAAGTTGCAGCCAAAAGGTCAAATAAATCTGCAGAATAAGAAAAAGAAACCTCATCACAAGAAAATCACTGGTTTCCAGTTTGCACCAGGAAGTTCATCAGAAGTGCTTATTACATCTGCAGATTCACGAATTCGGGTCATTGATGGTGTTGATCTGATTCACAAGTTCAAAGGGTTTCGCAACACAAACAGGCAAATATCCGCCTCTGTCACAGAAAATGGAAAATATGTGGTCTGTGCAAGTGAGGATTCTTATGTGTACGTGTGGAAACATGATACCCGACCAGGCAGAAGCAAAGGCATTGCTGTGACTCGCTCATATGAACATTTCCACTCGCAAGATGTTTCAGTGGCCATCCCTTGGCCTGGCATGGGCGACACATGGGAACTGCAAGATAGTTTCTCAGGAGAGCAAATCGAGTATATTAATGGTGATGAGGGTTCACCATCAGTATCTGTATGTACCAGCAGCCCCCTTAATGGAACCATTTCTAGTGCAACCAACGGTTACTTCTTTGATAGAATATCCGCAACGTGGCCTGAGGAAAAACTGCTTTTGGCTACAAAGAACACAAGCCCTCATGCCAGTGTGGACTTTGCCAATGGGTCCGCCTGGGGTATGGTCATTGTAACTGCTGGCCTCAGAGGCGAAATTAGAACTTTCCAGAATTTTGGATTGCCAGTACGGATATGA 2250 46.44 MSKAGDEDDDDECFYESLDRVLSSSCSCSSSNSDDDADPNASPNYASEHPFPIPKFPIGASKYDIWISEPSSIEERRSRLLREMGLSNDPSLSRVKPTADRSNGDIGRSVSSGSNGSPIANAASASPNKPPTGKMCRRVDETRGDSTKSEPSFVPHDQVCTIKNLDNGKEFVVNELREDGMWNKLKEEGNKDNLDINVNGGVGGGSKLKKKGGWFKSIRSVASSVTGHRERRSSDERDTSSEKGGRRSSSATDDSQEVSFHGPERIRVRQYGKSCKELTALYKSQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVETERKGDLLTEKPEDGNLNLLFVASGSPEPTSMSPNVDNNSSEKKRRGRSSVSRKSVSLDHIKVPETVFGLSEKPFCSFQGHGDDVLDLSWSSKSQQLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCRLYNTSENKLQPKGQINLQNKKKKPHHKKITGFQFAPGSSSEVLITSADSRIRVIDGVDLIHKFKGFRNTNRQISASVTENGKYVVCASEDSYVYVWKHDTRPGRSKGIAVTRSYEHFHSQDVSVAIPWPGMGDTWELQDSFSGEQIEYINGDEGSPSVSVCTSSPLNGTISSATNGYFFDRISATWPEEKLLLATKNTSPHASVDFANGSAWGMVIVTAGLRGEIRTFQNFGLPVRI* 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3302031 3310746 - Vvi19g261 Vvi19g261 781760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g261 749 MobiDBLite consensus disorder prediction 345 378 - -
Vvi19g261 749 PANTHER WD REPEAT DOMAIN 44 117 194 IPR040324 -
Vvi19g261 749 PANTHER WD REPEAT DOMAIN 44 5 112 IPR040324 -
Vvi19g261 749 PANTHER WD REPEAT DOMAIN 44 669 749 IPR040324 -
Vvi19g261 749 PANTHER WD REPEAT DOMAIN 44 194 657 IPR040324 -
Vvi19g261 749 PRINTS G protein beta WD-40 repeat signature 306 320 IPR020472 -
Vvi19g261 749 PRINTS G protein beta WD-40 repeat signature 419 433 IPR020472 -
Vvi19g261 749 PRINTS G protein beta WD-40 repeat signature 461 475 IPR020472 -
Vvi19g261 749 MobiDBLite consensus disorder prediction 225 263 - -
Vvi19g261 749 MobiDBLite consensus disorder prediction 84 154 - -
Vvi19g261 749 Pfam WD domain, G-beta repeat 395 431 IPR001680 GO:0005515
Vvi19g261 749 Pfam WD domain, G-beta repeat 437 474 IPR001680 GO:0005515
Vvi19g261 749 Pfam WD domain, G-beta repeat 286 318 IPR001680 GO:0005515
Vvi19g261 749 MobiDBLite consensus disorder prediction 25 40 - -
Vvi19g261 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 435 - -
Vvi19g261 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 441 475 - -
Vvi19g261 749 MobiDBLite consensus disorder prediction 225 250 - -
Vvi19g261 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 441 IPR001680 GO:0005515
Vvi19g261 749 MobiDBLite consensus disorder prediction 361 378 - -
Vvi19g261 749 SMART WD40_4 477 515 IPR001680 GO:0005515
Vvi19g261 749 SMART WD40_4 528 567 IPR001680 GO:0005515
Vvi19g261 749 SMART WD40_4 280 319 IPR001680 GO:0005515
Vvi19g261 749 SMART WD40_4 435 474 IPR001680 GO:0005515
Vvi19g261 749 SMART WD40_4 393 432 IPR001680 GO:0005515
Vvi19g261 749 SMART WD40_4 568 609 IPR001680 GO:0005515
Vvi19g261 749 Gene3D - 273 635 IPR015943 GO:0005515
Vvi19g261 749 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 287 320 - -
Vvi19g261 749 MobiDBLite consensus disorder prediction 345 360 - -
Vvi19g261 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 441 475 IPR001680 GO:0005515
Vvi19g261 749 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 320 IPR001680 GO:0005515
Vvi19g261 749 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 5 112 - -
Vvi19g261 749 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 117 194 - -
Vvi19g261 749 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 669 749 - -
Vvi19g261 749 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 194 657 - -
Vvi19g261 749 SUPERFAMILY WD40 repeat-like 283 612 IPR036322 GO:0005515
Vvi19g261 749 MobiDBLite consensus disorder prediction 91 128 - -
Vvi19g261 749 MobiDBLite consensus disorder prediction 25 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g261 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - vvi:100264190 1302.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34