Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g27 | ATGCCCGGGAACAAGTACAACGGTATTTCCAGCGTCCCCACCAGCAGAGTAGAGAGGCTCTTGAGGGACAGAGAGTTAAGGAAGAGCAGCAGGGCATCTCATCCAAATGAGGCAAATGATACAAACAGGGGAACAGAGGTTTTGGAACATGAAGGTGATAACTTGGGGTCTTCCCATGTGGAACAGCATTCAGAAACAGCTGCAATCCGAGGAGTGCTTAGTGAGGAATGTGAAAAACAAGAGACCAGGCCTGCCAGACAGAGACTTCTGGTGGTGGCTAACAGGCTGCCGGTGTCTGCAATTAGGAGAGGTGAGGAATCATGGTCCCTAGAGATAAGTGCCGGGGGTCTAGTCAGTGCTCTTCTGGGTGTAAAGGAGTTTGAAGCAAGATGGATTGGATGGGCAGGTGTAAATGTGCCTGATGAGGCTGGACAGAGGGCACTTACCAAAGCTTTAGCTGAAAAGATGTGTATCCCAGTATTTCTTGATGAAGATATTGTTCATCAATATTATAATGGCTACTGCAACAACATTTTGTGGCCTCTTTTCCATTACCTTGGACTTCCGCAAGAAGATCGACTTGCCACCACTAGAAGCTTTCAGTCTCAGTTTGCCGCATATAAGAAGGCAAATCAAATGTTTGCTGATGTGGTAAATAAACATTATGAAGAAGGTGATGTTGTTTGGTGCCATGATTACCATCTCATGTTTCTTCCAAAATGCCTGAAGAAATATAACAGTGAAATGAAAGTTGGCTGGTTTCTCCACACACCATTTCCTTCTTCTGAAATCCACAGGACACTTCCGTCTCGATCTGAGCTGCTGCATTCGGTTCTTGCAGCTGATTTAGTTGGTTTCCATACTTACGATTATGCAAGGCATTTCGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAGACTGACTCGTGTGGCTGCTTTTCCTATTGGCATAGATTCGCATAGATTCATTCGAGCACTTGATGCTCCACAAGTTCAGGATCGCATTAATGAATTAAAGCGAACATTTACAGGGCGAAAGGTGATGTTAGGCGTCGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAGATACTGGCATTTGAAAAGTTTCTTGAGGAAAACTCAGAGTGGCAACAGAAAGTAGTTTTGCTGCAAATTGCCGTGCCTACAAGAACAGACGTTCCCGAGTATCAAAAACTTACAAGTCAGGTTCATGAAATTGTTGGACGCATTAATGGCAGATTTGGAACCTTGACAGCTGTTCCAATACATCACCTGGATCGTTCTCTTGACTTTTATGCATTATGTGCACTATATGCTGTTACAGATGTGGCACTCGTAACATCTTTGAGGGACGGAATGAATCTGGTCAGCTATGAGTTTGTGGCTTGCCAAGAATCTAAGAAAGGGGTTCTCATCCTTAGTGAATTTGCTGGTGCAGCCCAATCCTTGGGTGCCGGAGCAATCCTAGTGAACCCTTGGAACATCACAGAAGTTGCTTCTTCAATTGCTCAGGCTTTGAATATGCCACCTGAAGAAAGAGAAAAACGGCATGAGCATAACTTTGAGCATGTGAAAAACCACACTGCTCAAGAATGGGCTGAAACTTTTGTAAGTGAGTTGAATGATACAGTTGTTGAGGCAGATCTTAGGAAAAGGAAGGTCCCGCCAAGACTTACACCTGAAAATGCAATTAAATGTTATCTGCAGTCCAATAATCGATTACTCATATTGGGATTCAATGTAACATTAACTGAACCAGTGGATACTCCTGGGAGTAGAGGGGGGGATCAAATTAAAGAAATGGATCTTAAACTGCACCCAGAGTTGAAGGGGCCCTTGACAGCACTCGGCAATGATCCAAAGACAACCATCGTTGTTCTTAGCGGAAGTGACAGAACTGTCTTGGATGATAACTTCGGGGAGTTTGACATGTGGTTAGCAGCAGAAAATGGGATGTTTTTACGTCACACAAAAGGAGAATGGATGACAACAATGCCTGAGCATTTAAACATGGAGTGGGTTGACAGTGTAAAGCATGTTTTTGAGTATTTCACTGAAAGAACGCCTCGATCACAACTTCAAAAACGTGAAACTTCACTTGTATGGAATTACAAGTATGCAGATGCTGAATTTGGAAAGCTTCAAGCTAGGGATATGTTGCAGCATCTCTGGACAGGTCCAATTTCAAATGCATCTGTTGACGTTGTCCAGGGTAGTCGCTCTGTGGAAGTGCGTGCAGTTGGTGTTACAAAGGGTGCAGCCATTGATCGTATATTAGGAGAGATAGTTCACAATAAATCCATGACCTCACCAATTGACTATGTTTTATGCGCTGGCCATTTTCTGGGGAAGGATGAAGATGTGTACACATTTTTTGAGCCAGAGCTGCCTTCTGATAACATAAGCATGGCAAAAAGCAGAGCGATCGATGCATTTAAGCGGCCATCACCAGAGAAGACATCATGGAATGTGCTTGATCTCAAGGGGGAGAACTACTTCTCTTGTGCAGTAGGGCGAACTCGTACCAAGGCTCGCTTCACCTTTGGATCATCAGACGAAGTCGTCTCATTTCTAAAGGAACTGGCTGGAGCCAAGTCTTCTTTTTAA | 2643 | 43.97 | MPGNKYNGISSVPTSRVERLLRDRELRKSSRASHPNEANDTNRGTEVLEHEGDNLGSSHVEQHSETAAIRGVLSEECEKQETRPARQRLLVVANRLPVSAIRRGEESWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEAGQRALTKALAEKMCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKYNSEMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSHRFIRALDAPQVQDRINELKRTFTGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSEWQQKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFYALCALYAVTDVALVTSLRDGMNLVSYEFVACQESKKGVLILSEFAGAAQSLGAGAILVNPWNITEVASSIAQALNMPPEEREKRHEHNFEHVKNHTAQEWAETFVSELNDTVVEADLRKRKVPPRLTPENAIKCYLQSNNRLLILGFNVTLTEPVDTPGSRGGDQIKEMDLKLHPELKGPLTALGNDPKTTIVVLSGSDRTVLDDNFGEFDMWLAAENGMFLRHTKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSQLQKRETSLVWNYKYADAEFGKLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHNKSMTSPIDYVLCAGHFLGKDEDVYTFFEPELPSDNISMAKSRAIDAFKRPSPEKTSWNVLDLKGENYFSCAVGRTRTKARFTFGSSDEVVSFLKELAGAKSSF* | 881 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 292202 | 312996 | - | Vvi19g27 | Vvi19g27 | 781526 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g27 | 880 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 27 | 809 | IPR001830 | GO:0003824|GO:0005992 | |
Vvi19g27 | 880 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 818 | 874 | IPR001830 | GO:0003824|GO:0005992 | |
Vvi19g27 | 880 | Gene3D | Glycogen Phosphorylase B; | 79 | 334 | - | - | |
Vvi19g27 | 880 | SUPERFAMILY | HAD-like | 613 | 874 | IPR036412 | - | |
Vvi19g27 | 880 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 87 | 556 | - | - | |
Vvi19g27 | 880 | CDD | GT20_TPS | 88 | 553 | IPR001830 | GO:0003824|GO:0005992 | |
Vvi19g27 | 880 | MobiDBLite | consensus disorder prediction | 17 | 34 | - | - | |
Vvi19g27 | 880 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Vvi19g27 | 880 | CDD | HAD_TPP | 586 | 867 | - | - | |
Vvi19g27 | 880 | Pfam | Trehalose-phosphatase | 611 | 814 | IPR003337 | GO:0003824|GO:0005992 | |
Vvi19g27 | 880 | Gene3D | - | 679 | 759 | - | - | |
Vvi19g27 | 880 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 818 | 874 | - | - | |
Vvi19g27 | 880 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 27 | 809 | - | - | |
Vvi19g27 | 880 | Pfam | Glycosyltransferase family 20 | 88 | 553 | IPR001830 | GO:0003824|GO:0005992 | |
Vvi19g27 | 880 | Gene3D | Glycogen Phosphorylase B; | 335 | 538 | - | - | |
Vvi19g27 | 880 | Gene3D | - | 613 | 773 | IPR023214 | - | |
Vvi19g27 | 880 | TIGRFAM | trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 88 | 553 | IPR012766 | GO:0003825|GO:0005992 |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g27 | K16055 | - | vvi:100265802 | 1746.1 |