Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g27 ATGCCCGGGAACAAGTACAACGGTATTTCCAGCGTCCCCACCAGCAGAGTAGAGAGGCTCTTGAGGGACAGAGAGTTAAGGAAGAGCAGCAGGGCATCTCATCCAAATGAGGCAAATGATACAAACAGGGGAACAGAGGTTTTGGAACATGAAGGTGATAACTTGGGGTCTTCCCATGTGGAACAGCATTCAGAAACAGCTGCAATCCGAGGAGTGCTTAGTGAGGAATGTGAAAAACAAGAGACCAGGCCTGCCAGACAGAGACTTCTGGTGGTGGCTAACAGGCTGCCGGTGTCTGCAATTAGGAGAGGTGAGGAATCATGGTCCCTAGAGATAAGTGCCGGGGGTCTAGTCAGTGCTCTTCTGGGTGTAAAGGAGTTTGAAGCAAGATGGATTGGATGGGCAGGTGTAAATGTGCCTGATGAGGCTGGACAGAGGGCACTTACCAAAGCTTTAGCTGAAAAGATGTGTATCCCAGTATTTCTTGATGAAGATATTGTTCATCAATATTATAATGGCTACTGCAACAACATTTTGTGGCCTCTTTTCCATTACCTTGGACTTCCGCAAGAAGATCGACTTGCCACCACTAGAAGCTTTCAGTCTCAGTTTGCCGCATATAAGAAGGCAAATCAAATGTTTGCTGATGTGGTAAATAAACATTATGAAGAAGGTGATGTTGTTTGGTGCCATGATTACCATCTCATGTTTCTTCCAAAATGCCTGAAGAAATATAACAGTGAAATGAAAGTTGGCTGGTTTCTCCACACACCATTTCCTTCTTCTGAAATCCACAGGACACTTCCGTCTCGATCTGAGCTGCTGCATTCGGTTCTTGCAGCTGATTTAGTTGGTTTCCATACTTACGATTATGCAAGGCATTTCGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAGACTGACTCGTGTGGCTGCTTTTCCTATTGGCATAGATTCGCATAGATTCATTCGAGCACTTGATGCTCCACAAGTTCAGGATCGCATTAATGAATTAAAGCGAACATTTACAGGGCGAAAGGTGATGTTAGGCGTCGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAGATACTGGCATTTGAAAAGTTTCTTGAGGAAAACTCAGAGTGGCAACAGAAAGTAGTTTTGCTGCAAATTGCCGTGCCTACAAGAACAGACGTTCCCGAGTATCAAAAACTTACAAGTCAGGTTCATGAAATTGTTGGACGCATTAATGGCAGATTTGGAACCTTGACAGCTGTTCCAATACATCACCTGGATCGTTCTCTTGACTTTTATGCATTATGTGCACTATATGCTGTTACAGATGTGGCACTCGTAACATCTTTGAGGGACGGAATGAATCTGGTCAGCTATGAGTTTGTGGCTTGCCAAGAATCTAAGAAAGGGGTTCTCATCCTTAGTGAATTTGCTGGTGCAGCCCAATCCTTGGGTGCCGGAGCAATCCTAGTGAACCCTTGGAACATCACAGAAGTTGCTTCTTCAATTGCTCAGGCTTTGAATATGCCACCTGAAGAAAGAGAAAAACGGCATGAGCATAACTTTGAGCATGTGAAAAACCACACTGCTCAAGAATGGGCTGAAACTTTTGTAAGTGAGTTGAATGATACAGTTGTTGAGGCAGATCTTAGGAAAAGGAAGGTCCCGCCAAGACTTACACCTGAAAATGCAATTAAATGTTATCTGCAGTCCAATAATCGATTACTCATATTGGGATTCAATGTAACATTAACTGAACCAGTGGATACTCCTGGGAGTAGAGGGGGGGATCAAATTAAAGAAATGGATCTTAAACTGCACCCAGAGTTGAAGGGGCCCTTGACAGCACTCGGCAATGATCCAAAGACAACCATCGTTGTTCTTAGCGGAAGTGACAGAACTGTCTTGGATGATAACTTCGGGGAGTTTGACATGTGGTTAGCAGCAGAAAATGGGATGTTTTTACGTCACACAAAAGGAGAATGGATGACAACAATGCCTGAGCATTTAAACATGGAGTGGGTTGACAGTGTAAAGCATGTTTTTGAGTATTTCACTGAAAGAACGCCTCGATCACAACTTCAAAAACGTGAAACTTCACTTGTATGGAATTACAAGTATGCAGATGCTGAATTTGGAAAGCTTCAAGCTAGGGATATGTTGCAGCATCTCTGGACAGGTCCAATTTCAAATGCATCTGTTGACGTTGTCCAGGGTAGTCGCTCTGTGGAAGTGCGTGCAGTTGGTGTTACAAAGGGTGCAGCCATTGATCGTATATTAGGAGAGATAGTTCACAATAAATCCATGACCTCACCAATTGACTATGTTTTATGCGCTGGCCATTTTCTGGGGAAGGATGAAGATGTGTACACATTTTTTGAGCCAGAGCTGCCTTCTGATAACATAAGCATGGCAAAAAGCAGAGCGATCGATGCATTTAAGCGGCCATCACCAGAGAAGACATCATGGAATGTGCTTGATCTCAAGGGGGAGAACTACTTCTCTTGTGCAGTAGGGCGAACTCGTACCAAGGCTCGCTTCACCTTTGGATCATCAGACGAAGTCGTCTCATTTCTAAAGGAACTGGCTGGAGCCAAGTCTTCTTTTTAA 2643 43.97 MPGNKYNGISSVPTSRVERLLRDRELRKSSRASHPNEANDTNRGTEVLEHEGDNLGSSHVEQHSETAAIRGVLSEECEKQETRPARQRLLVVANRLPVSAIRRGEESWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEAGQRALTKALAEKMCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKYNSEMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSHRFIRALDAPQVQDRINELKRTFTGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSEWQQKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFYALCALYAVTDVALVTSLRDGMNLVSYEFVACQESKKGVLILSEFAGAAQSLGAGAILVNPWNITEVASSIAQALNMPPEEREKRHEHNFEHVKNHTAQEWAETFVSELNDTVVEADLRKRKVPPRLTPENAIKCYLQSNNRLLILGFNVTLTEPVDTPGSRGGDQIKEMDLKLHPELKGPLTALGNDPKTTIVVLSGSDRTVLDDNFGEFDMWLAAENGMFLRHTKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSQLQKRETSLVWNYKYADAEFGKLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHNKSMTSPIDYVLCAGHFLGKDEDVYTFFEPELPSDNISMAKSRAIDAFKRPSPEKTSWNVLDLKGENYFSCAVGRTRTKARFTFGSSDEVVSFLKELAGAKSSF* 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 292202 312996 - Vvi19g27 Vvi19g27 781526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g27 880 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 809 IPR001830 GO:0003824|GO:0005992
Vvi19g27 880 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 818 874 IPR001830 GO:0003824|GO:0005992
Vvi19g27 880 Gene3D Glycogen Phosphorylase B; 79 334 - -
Vvi19g27 880 SUPERFAMILY HAD-like 613 874 IPR036412 -
Vvi19g27 880 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 87 556 - -
Vvi19g27 880 CDD GT20_TPS 88 553 IPR001830 GO:0003824|GO:0005992
Vvi19g27 880 MobiDBLite consensus disorder prediction 17 34 - -
Vvi19g27 880 MobiDBLite consensus disorder prediction 1 50 - -
Vvi19g27 880 CDD HAD_TPP 586 867 - -
Vvi19g27 880 Pfam Trehalose-phosphatase 611 814 IPR003337 GO:0003824|GO:0005992
Vvi19g27 880 Gene3D - 679 759 - -
Vvi19g27 880 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 818 874 - -
Vvi19g27 880 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 809 - -
Vvi19g27 880 Pfam Glycosyltransferase family 20 88 553 IPR001830 GO:0003824|GO:0005992
Vvi19g27 880 Gene3D Glycogen Phosphorylase B; 335 538 - -
Vvi19g27 880 Gene3D - 613 773 IPR023214 -
Vvi19g27 880 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 88 553 IPR012766 GO:0003825|GO:0005992
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g299 Vvi19g27 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g27 K16055 - vvi:100265802 1746.1