Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g270 ATGGTGGACATTAAGGCACAACCAGAGTCTATTACAGCAAACCCTGAACCACCACCCATCTTTACGAAAGCTAAGAACAGTGGCCATGTTATATTGAAGTTTGAGGAGGTTGATTACAAGGCTAAAACCCATAAAGGAGGACTGCTTAGGAAGGATTCGAAACCAGAGGAGAAGCACATATTGAAGGGAATCACAGGCATTGTGCTACCAGGTGAAATGCTGGCCATGTTAGGCCCATCAGGCAGTGGCAAAACAACACTGCTTACTGCCCTTGGAGGTCGTCTTGGTGGACGGCTCAATGGAAGCATAACCTACAATGGCAAGCCCTTTTCAAACCGAATGAAGAGGAGCACAGGGTTTGTAACACAAGATGATGTTCTTTATCCACATCTAACTGTGACTGAGACATTAGTATTCACTGCCCTTCTCCGGTTGCCTAATACTATTAGTAAAGAAGACAAGGTACGGCATGCGGAGGCAGTGATAACTCAGCTTGGTTTAACTAAGTGCAAGGATAGTATAATTGGGAACCCCTTTCTGAGAGGGGTTTCGGGGGGAGAGCGTAAAAGGGTTAGCATAGGGCAAGAGATGCTAATAAACCCTAGTCTACTGTTTTTGGATGAGCCCACATCCGGCCTCGACTCAACAACTGCTCAACGCATCGTGTCCACGTTATGGGAGCTAGCGAAAGGAGGAAGAACCGTTGTGATGACGATACACCAGCCTTCTAGTAGACTATTTTACATGTTTCATAAGGTGTTATTGTTATCAGAAGGGAACCCTTTATATTTTGGGAAGGGAGCAGAAGCCATGGACTACTTTTCTAGCATTGGATTTGCCCCATCAGTTGCAATGAATCCGTCTGATTTTCTACTAGATCTTGCCAATGGTGTTTTGTCTGATGATATACATGAGGATCCAACCACCATCAAGCAGACACTGGTTTTATCATATAGGAGCAAGATTGATGAAGGACTGAAGGCAGAACTCCGAGAAATCGATAACCACCTTCAAGACGGATTAGAAGACAAGCAGCTAGACCGGTGGGCGACAACTTGGTGGCAGCAGTGCTCTGTGTTGTTTAGAAGAGGGGTAAAGGAAAGGAGGCATGAATCATTCTCTGGCCTCAAGATTGGTCAGGTCCTGGTTGTGGGCTTCCTTTCAGGGTTATTGTGGTGGCAATCTGATTCTTCACACCTGCAAGATCAGATTGGGCTTCTCTTCTTTTGCTCTGGATTTTGGGGCTTCTTCCCTCTGTTCCAAGCTATTTTCACCTTCCCCCAGGAGCGGATGATGCTTGAAAAGGAAAGATCTTCAGGCATGTACAGGCTTTCATCATACTTCATGTCAAGGACCATAGGTGACCTTCCCATGGAGCTGGTTCTTCCCACCATTTTTGTTATCATAACCTATTGGATGGCAGGCCTCAAACCCAATGCCATTAACTTCCTACACACCTTATTTGCCCTCCTATTTAGCGTACTAGTTTCTCAAAGCCTCGGCCTTGCTCTGGGTGCTGCAGTAATGGACCAAAAATCAGCCACCATACTAGGATCAGTAATCATGCTCTCATTCCTTCTTGCGGGAGGGTACTATGTCCAAAATGTTCCCCATTTCATAGCTTGGATTAAATACGTCTCTATTAGCCATTACACATATAAACTGTTGTTGGGTTCACAATACAAGCCTGGAGACATCTACCCATTGCCCGGTAAAAATAGCTAG 1725 45.39 MVDIKAQPESITANPEPPPIFTKAKNSGHVILKFEEVDYKAKTHKGGLLRKDSKPEEKHILKGITGIVLPGEMLAMLGPSGSGKTTLLTALGGRLGGRLNGSITYNGKPFSNRMKRSTGFVTQDDVLYPHLTVTETLVFTALLRLPNTISKEDKVRHAEAVITQLGLTKCKDSIIGNPFLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELAKGGRTVVMTIHQPSSRLFYMFHKVLLLSEGNPLYFGKGAEAMDYFSSIGFAPSVAMNPSDFLLDLANGVLSDDIHEDPTTIKQTLVLSYRSKIDEGLKAELREIDNHLQDGLEDKQLDRWATTWWQQCSVLFRRGVKERRHESFSGLKIGQVLVVGFLSGLLWWQSDSSHLQDQIGLLFFCSGFWGFFPLFQAIFTFPQERMMLEKERSSGMYRLSSYFMSRTIGDLPMELVLPTIFVIITYWMAGLKPNAINFLHTLFALLFSVLVSQSLGLALGAAVMDQKSATILGSVIMLSFLLAGGYYVQNVPHFIAWIKYVSISHYTYKLLLGSQYKPGDIYPLPGKNS* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3404281 3407783 + Vvi19g270 Vvi19g270 781769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g270 574 Gene3D - 49 277 IPR027417 -
Vvi19g270 574 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 32 283 IPR003439 GO:0005524
Vvi19g270 574 Pfam ABC-2 type transporter 355 561 IPR013525 GO:0016020|GO:0140359
Vvi19g270 574 ProSitePatterns ABC transporters family signature. 183 197 IPR017871 GO:0005524
Vvi19g270 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 277 IPR027417 -
Vvi19g270 574 Pfam ABC transporter 62 211 IPR003439 GO:0005524
Vvi19g270 574 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 27 567 - -
Vvi19g270 574 SMART AAA_5 70 260 IPR003593 -
Vvi19g270 574 Pfam ABC-2 type transporter 240 337 IPR043926 GO:0140359
Vvi19g270 574 CDD ABCG_EPDR 29 265 - -
Vvi19g270 574 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 567 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g270 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100265848 1124.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g270 . . . . . . . . Cmo16g00851 . . . . . . . . . . . . . . . Cla10g00629 Cam10g0620 Cec10g0650 Cco10g0625 Clacu10g0651 Cmu10g1474 Cre10g0861 . . Cone14ag1077 . . Csa03g00613 . . . . . . . . . . . . . . . . . Cpe14g00687 . . . . . . . . . . . . . . . Lsi05g00704 . Chy06g01711 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003135 1 2 2 2 2 2 0 2 2 2 2 2 3 2 2 1 2 2 1 2 2 2 1 0 3 1 2 1 2 1 51