Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g276 ATGGGGAAATCTGGTAGAGATTGGACACAGATCTACGCAATCTACGGCATGGAGGAAGGCCAAACCCTAGTTTTCCTTCTAATCCACGCCATTTTCTTCTCATTCCTCTCCATCCTCTTCCTCCTCTACTTCAACCCAATCTGCTACTTCTTCGGATCACTCGCACTCCCTGCCGGAGCCGCCCGCTTCGCGGCCGGATTCACCGGCTCCGTCACGGCCATCTCCGCCGTCTGCCTCTTCTTTGCCGCCGGCAACATGTTCTACTCCTCCGTCGGTCTCCATTGGGACATGGCCCAGCGCATGGTCAGCGCGGTCAACGACTGGTCAACAGTGAAGTACGCCCTCGACGTCGGCTGCGGCCGCGGCATCCTCCTCAACGCCGTCGCCATGCAGCTGAAAAAGGAGGGAAGCTCGGGGCGCGTCGTGGGGCTGGACCGCCGGAAGACCACGGTTTCCACACTCCGCACCGCCGGGATCGAGGGGGTGCAGGAGTACGTGACGTGCCGAGAAGGCGACGCGCGTCGGCTGCCGTTCTCCGACAATTACTTCGACGTGGTGGTGTCGGCAGTGTTCAAAGTATTGATACTTGTATGGCCTCTGGAGTTTGAATTAATGAAAAGATATATGAGATTAATTCAAAATATTTTCCTCGCAAAATTTAGAATGATGATGTTGTAG 678 55.75 MGKSGRDWTQIYAIYGMEEGQTLVFLLIHAIFFSFLSILFLLYFNPICYFFGSLALPAGAARFAAGFTGSVTAISAVCLFFAAGNMFYSSVGLHWDMAQRMVSAVNDWSTVKYALDVGCGRGILLNAVAMQLKKEGSSGRVVGLDRRKTTVSTLRTAGIEGVQEYVTCREGDARRLPFSDNYFDVVVSAVFKVLILVWPLEFELMKRYMRLIQNIFLAKFRMMML* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3520520 3522543 - Vvi19g276 Vvi19g276 781775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g276 225 PANTHER EXPRESSED PROTEIN 1 191 - -
Vvi19g276 225 CDD AdoMet_MTases 115 188 - -
Vvi19g276 225 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 191 - -
Vvi19g276 225 Pfam Methyltransferase domain 115 190 IPR013216 GO:0008168
Vvi19g276 225 Gene3D Vaccinia Virus protein VP39 84 201 IPR029063 -
Vvi19g276 225 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 92 207 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g276 - - - vvi:100264154 352.829
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g276 Blo03g00637 Blo03g01532 . Bda09g00488 . Bpe08g01040 . . . . . Cma09g00888 Car01g01015 Car09g00805 Sed01g0385 Cpe06g00711 Cpe02g00718 Bhi09g02012 Tan01g5059 Cmetu11g1228 . Hepe01g1362 Mch11g1104 . Cla11g01791 Cam11g1855 Cec11g1880 Cco11g1886 Clacu11g2017 Cmu11g1827 Cre11g2233 Cone6ag0121 Cone9ag0145 . . Lsi04g01294 . . . . . . . Bpe11g00496 . Bma07g01194 . . Cmo01g01244 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004198 2 1 3 3 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 40