Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g28 ATGGGTCGAAAGATTGAAATGAGGAAGATAGAGAATACTACTAGACGTCAAATCACATTCTCTAAGCGCAAAAGTAGTCTGATAAGAAAGGCCAATGAAATCTCAATCTTATGTGATGTAGATGTCGCCTTGCTTACCTATTCACCATCTGGTCGTCTTAATAAGTTTTGCAATAGAGATAGGATGGAGGATGTGATAAAAAGTTACATCAATCTAAGTCCTGCAAAAAGATATTAG 237 36.29 MGRKIEMRKIENTTRRQITFSKRKSSLIRKANEISILCDVDVALLTYSPSGRLNKFCNRDRMEDVIKSYINLSPAKRY* 79
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 329776 330095 + Vvi19g28 Vvi19g28 781527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g28 78 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 74 - -
Vvi19g28 78 PANTHER MADS BOX PROTEIN 1 74 - -
Vvi19g28 78 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Vvi19g28 78 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 56 IPR002100 GO:0003677|GO:0046983
Vvi19g28 78 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Vvi19g28 78 Gene3D - 12 78 IPR036879 GO:0003677|GO:0046983
Vvi19g28 78 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Vvi19g28 78 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Vvi19g28 78 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Vvi19g28 78 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g28 - - - vvi:109121815 155.992
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g28 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14414 PF00319 SRF-TF 2.40E-21 No_clan Vvi TF