Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g282 ATGGATTCTCTGGGTTCGGGTGGGCCTGGCCCAAAGCGTTCATTGAGGAAGAAGGCGGGTTTGAAGAGTTATGATGAGAATTTGATGGATGATCTTATAGATAAGCATTTGGGTGGTTCCATGAAGAAGAAGAATAGAACGACACAGGACATAGAGAAAGAGACAGAGACAGAAGCCATGATAGCACTATCTGTAGGGTTTCCTATAGATGCATTGCTTGAAGAGGAGATTCAAGCAGGAGTAGTGAGTGAATTGGATGGGAAAGAACAAAATGATTACATAGTTGTGCGGAATCATATACTTGCAAGATGGAGAGATAATGTGCATTCATGGCTTTCAAAAGGTCAGATTAAAGAAACTGTTGTGGTTTTAGAAGGTAGGAATCGACCAGGGGGAAGAGTTTATACACAGAAGATGGGCCAGAAGGGTAATTATGCTGCTGTGGATCTTGGTGGCAGTGTTATTACTGGCATCCATGCCAATCCATTAGGAGTTCTTGCTAGACAACTATCCATTCCCCTTCATAAGGTTAGAGATCGGTGTCCCTTGTACAAGCCAGATGGAGAAGTCATTGACAAAGAAATTGATTCAATGATTGAAATCATCTTTAATAAGTTGCTCGATAAAGTCACCCAGTTAAGACAGATAATGGGTGGATTTGCAAATGACATTTCGCTTGGTTCGGTTTTGGAGACATTAAGGCAGTTGTATGCTGTGGTTAGAAGCACAGAGGAAAGACAATTGTTTGATTGGCATCTTGCAAACTTGGAATATGCAAATGCTGGATGTCTTACAAACCTTTCAGCTGCCTACTGGGACCAGGATGATCCTTATGAAATGGGTGGCGACCACTGCTTTCTTGCTGGGGGTAACTGGAGATTGATCAAGGCATTGTGTGAAGGAGTTCCTATATTCTATGGAAAGACTGTTCATACTATTAAGTATGGAAATGATGGTGTTGAGGTGATTGCTGGGGACCAAGTGTTTCAGGCAGATATGGTCCTGTGTACTGTGCCTCTTGGGGTCCTAAAGAAAAGGGCCATAAGATTTGAGCCAGAATTACCTGTAAGAAAGCTTGCTGCAATTGATAGATTGGGTTTTGGGTTGCTGAATAAAGTTGCCATGGTTTTCCCTCGAGTTTTTTGGGGGGAAGACCTGGACACCTTTGGGCGCCTCAGCAATTGTAGCCATAAACGTGGAGAATTCTTTTTGTTTTACAGTTATCATACTGTTTCTGGAGGTCCAGTACTTGTTGCTCTGGTGGCTGGAGAGGCTGCACAAGCATTTGAATACACGGATCCTTCCACTTTGCTACATCGTGTTCTAAACATACTCAGAGGGATATATACTCCAAAGGGCATCAATGTGCCTAATCCCATACAAACAATATGTACAAGGTGGGGCAGTGATCCCCTTTCCTATGGTTCATATTCTCATGTCAGGGTACGTTCCTCTGGCAGTGACTATGATATACTTGCAGAAAGTGTAGCAGGTCGGCTGTTCTTTGCAGGCGAGGCCACAAATAGGCAATACCCAGCCAGCATGCATGGTGCCTTTCTGAGTGGCTTAAGAGAAGCTTCATGCATTTTGGGAGCTACAAGGTCTCATCAAAGTAATTCCAGGAAATTAATGCAGAAAAATATTGGACCAAGCAATGATGTCTTGATAGATCTATTCAAAAGGCCTGATCTAGCATTTGGAAAGTTTAGCTTTATATTTAACCCATTGACAGTAGATCCAAAAGCAATGGGGATTATGAGAATTAACCTACCATTGCAGCTTTACACCATGTTATCTCGCGAACAGGCACATCAGGTTCAACTGATCGCTGGAGAGGATGAAAGTAGGTTGTCTTTCTTGCTTAAAGATCTTGGGCTGAAGCTAATGGGACCTAGTTCAATGGGAAGCATAGGCAACTCTTTGGCCGCTACCATTGCTAGTGCACGAAGAGGCAGGGGCAGGTACCGCGTTTCTTCTAAATATGATTTCAGTTCAATGCACTAA 2004 43.06 MDSLGSGGPGPKRSLRKKAGLKSYDENLMDDLIDKHLGGSMKKKNRTTQDIEKETETEAMIALSVGFPIDALLEEEIQAGVVSELDGKEQNDYIVVRNHILARWRDNVHSWLSKGQIKETVVVLEGRNRPGGRVYTQKMGQKGNYAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDRCPLYKPDGEVIDKEIDSMIEIIFNKLLDKVTQLRQIMGGFANDISLGSVLETLRQLYAVVRSTEERQLFDWHLANLEYANAGCLTNLSAAYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGKTVHTIKYGNDGVEVIAGDQVFQADMVLCTVPLGVLKKRAIRFEPELPVRKLAAIDRLGFGLLNKVAMVFPRVFWGEDLDTFGRLSNCSHKRGEFFLFYSYHTVSGGPVLVALVAGEAAQAFEYTDPSTLLHRVLNILRGIYTPKGINVPNPIQTICTRWGSDPLSYGSYSHVRVRSSGSDYDILAESVAGRLFFAGEATNRQYPASMHGAFLSGLREASCILGATRSHQSNSRKLMQKNIGPSNDVLIDLFKRPDLAFGKFSFIFNPLTVDPKAMGIMRINLPLQLYTMLSREQAHQVQLIAGEDESRLSFLLKDLGLKLMGPSSMGSIGNSLAATIASARRGRGRYRVSSKYDFSSMH* 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3579038 3581410 + Vvi19g282 Vvi19g282 781781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g282 667 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g282 667 Pfam Flavin containing amine oxidoreductase 120 530 IPR002937 GO:0016491
Vvi19g282 667 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 37 121 - -
Vvi19g282 667 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 120 652 - -
Vvi19g282 667 Gene3D - 180 485 - -
Vvi19g282 667 SUPERFAMILY FAD-linked reductases, C-terminal domain 366 479 - -
Vvi19g282 667 Gene3D - 120 527 IPR036188 -
Vvi19g282 667 SUPERFAMILY Homeodomain-like 54 121 IPR009057 -
Vvi19g282 667 PANTHER FLAVIN MONOAMINE OXIDASE 37 121 - -
Vvi19g282 667 PANTHER FLAVIN MONOAMINE OXIDASE 120 652 - -
Vvi19g282 667 SUPERFAMILY FAD/NAD(P)-binding domain 120 531 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g282 - - - vvi:100262290 1072.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g282 . Blo03g01530 . Bda09g00486 . . . . . . . . Car01g01002 . . Cpe06g00714 Cpe02g00722 Bhi09g02001 . . . Hepe01g1358 Mch11g1108 . Cla11g01798 Cam11g1864 Cec11g1888 Cco11g1894 Clacu11g2027 Cmu11g1833 Cre11g2239 . Cone9ag0142 . . Lsi04g01286 . . . . . . . . . Bma07g01198 Bma14g00189 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004494 2 2 2 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 2 39