Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g29 ATGGAGATATCGAATGAGTCAGCTATTAAGAAACCGAAGAGGCTAACATCTGTTGTATGGAATCATTTTGAAAGGGTTAGGAAGGCAGACATCTGTTATGCTGTTTGCATACACTGTAACAAAAGGCTTAGTGGATCAAGTAATAGTGGAACTACACATCTGAGAAATCATTTAATGCGTTGTCTGAAAAGGTCTAATTATGATGTGTCCCAACTACTTGCGGCAAAGAGAAGGAAAAAAGAAGGTGCTCTTAGCCTTACAGCTATCAATTATGACGAAGGGCAAAGAAAAGAGGAGAATATAAAGCCTACAATTCTGAAGTTTGATCAAGAGCAAAAAAAAGATGAGCCCATCAACCTTGGAAGTATTAGATTTGATCAGGAACGGAGTCGGCTGGATCTTGCCCGCATGATCATATTACATGGTTATCCCCTGGCCATGGTCAACCATGTTGGGTTCAAAGTATTTGTTAAGGATCTGCAGCCACTGTTTGAAGTCAATAGTGCCATTGAGCTTGATTGCATGGAAATTTATGGGAAAGAGAAACAGAAAGTGTATGAGGTTATGAGCAGATCGCATGGCAGAATTAATCTTGCTGTCGATATGTGGACTTCCCCTGAACAGGCTGAATATTTGTGTTTGACAGCACACTATATTGACGAGGATTGGAAATTACAAAAGAAGATACTGAATTTTGTCTCCCTCGATCCTTCTCATACTGAAGACATGCTCTCTGAAGTTATTATTAAGTGTCTGATGGAGTGGGAGGTTGGCCATAAGTTGTTTTCCATGACATTTCATGATTGTGCCACGAACGATGACGTCGCCCTAAGAGTTAAAGAGCACTTCTCCCAGGACAGGCCTCTCTTGGGCAGTGGTCAATTACTTGATGTGCGCTGTGTAGGTCATGTTCTAAATTTGATTGTTCAAGATTGCATTGAAGCACTTAGGGAGGTAACCCACAAGATCCGAGAAAGTGTTCGGTATGTCAAAACCTCACAGGCAACATTAGGAAAATTCAATGAGATTGCCCAACAAGTTGGAATCAATAGTCAGCAAAACTTGTTTCTTGATTGTCCAACTCAATGGAACTCAACATATCTCATGCTTGACAGAGTGTTAGAATACAAGGGGGCATTTTCTCTCTTGCAAGAGCATGACCCAGGCTACACAGTTGCTCTATCTGATACAGAGTGGGAATGGGCAAGTTCCATTACTAGCTATATGAAACTTCTTCTTGAAATTATCGCCGTCTTGTCCAGCAACAAATGCCCAACTGCAAATATATATTTTCCTGAGATTTGTGACATTCACATCCAATTGATCGAATGGTGCAAGAGTCCTGATGATTTTATTAGTTCTTTGGCACTGAAGATGAAAGCCAAGTTTGATAAATATTGGAGCAAGTGTAGTTTAGCTTTGGCAGTAGCCGTAATCTTAGATCCCCGATTCAAGATGAAACTGGTGGAGTATTACTATCCACAGATCTATGGTACTGATGCTGCAGATCGGATCAAGGATGTTTCTGATGGGATCAAGGAACTTTTCAATGTATACTGCTCCACCTCTGCTTCACTGCATCAAGGTGTAGCTCTCCCTGGCAGCAGCTTGCCTAGTACTAGTAATGATTCAAGGGATCGACTAAAGGGCTTTGACAAATTCATCCACGAAACTTCCCAGAATCAAAACATAGTATCTGATCTGGACAAATATTTGGAGGAGCCAGTATTTCCCCGCAACTGTGATTTCCACATACTAAATTGGTGGAAAGTCCAGAAGCCAAGGTACCCTATCTTATCTATGATGGTACGCGACGTTCTGGGGATTCCCATGTCCACTGTTGCCCCTGAGGTTGTGTTCAGCACAGGAGCTAGGGTTCTAGATCATTATCGTAGTTCCCTCAACCCAGATACCCGACAAGCGTTGATCTGCACACAAGACTGGTTGCAGACCGGATTAGAAGAACCCAACCAATCCTCACCCCACCAAACCTCACCCCACCCTGCTATCCCTCTTGCAATCGAAGCAAATTAG 2034 42.38 MEISNESAIKKPKRLTSVVWNHFERVRKADICYAVCIHCNKRLSGSSNSGTTHLRNHLMRCLKRSNYDVSQLLAAKRRKKEGALSLTAINYDEGQRKEENIKPTILKFDQEQKKDEPINLGSIRFDQERSRLDLARMIILHGYPLAMVNHVGFKVFVKDLQPLFEVNSAIELDCMEIYGKEKQKVYEVMSRSHGRINLAVDMWTSPEQAEYLCLTAHYIDEDWKLQKKILNFVSLDPSHTEDMLSEVIIKCLMEWEVGHKLFSMTFHDCATNDDVALRVKEHFSQDRPLLGSGQLLDVRCVGHVLNLIVQDCIEALREVTHKIRESVRYVKTSQATLGKFNEIAQQVGINSQQNLFLDCPTQWNSTYLMLDRVLEYKGAFSLLQEHDPGYTVALSDTEWEWASSITSYMKLLLEIIAVLSSNKCPTANIYFPEICDIHIQLIEWCKSPDDFISSLALKMKAKFDKYWSKCSLALAVAVILDPRFKMKLVEYYYPQIYGTDAADRIKDVSDGIKELFNVYCSTSASLHQGVALPGSSLPSTSNDSRDRLKGFDKFIHETSQNQNIVSDLDKYLEEPVFPRNCDFHILNWWKVQKPRYPILSMMVRDVLGIPMSTVAPEVVFSTGARVLDHYRSSLNPDTRQALICTQDWLQTGLEEPNQSSPHQTSPHPAIPLAIEAN* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 338322 344985 - Vvi19g29 Vvi19g29 781528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g29 677 Pfam hAT family C-terminal dimerisation region 567 649 IPR008906 GO:0046983
Vvi19g29 677 PANTHER BED FINGER-RELATED 2 658 IPR045259 -
Vvi19g29 677 SUPERFAMILY Ribonuclease H-like 190 650 IPR012337 -
Vvi19g29 677 Pfam Domain of unknown function (DUF4413) 420 519 IPR025525 GO:0003677
Vvi19g29 677 Pfam BED zinc finger 17 60 IPR003656 GO:0003677
Vvi19g29 677 SMART bed5 14 64 - -
Vvi19g29 677 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 2 658 - -
Vvi19g29 677 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Vvi19g29 677 MobiDBLite consensus disorder prediction 653 677 - -
Vvi19g29 677 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g29 - - - vvi:104877478 1378.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g29 . . . . . . . . . . . . . Car09g00597 . Cpe06g00527 . . . . . . . . Cla11g01688 Cam11g1752 Cec11g1776 Cco11g1777 Clacu11g1912 . Cre11g2133 . . . . Lsi04g01979 . . . . . . . . . . . . . Cmo09g00658 . . . . . . . . . . . . . . . . . . . . . . Chy07g00984 Cme07g01359
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000265 0 10 0 0 0 4 3 4 4 5 4 5 8 6 6 7 4 8 7 5 5 5 5 3 4 5 4 11 12 3 147