Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g294 ATGAACACCTCAACTATTGCACCAAATCAATGTGATTCCCCTTCCTGGAGTACTACCCTTGCTGAGTCTGTGCACAATACGAGTAGCCCCTGTGAAGTTGAAGAGTCCAATAACAGTGACAAAGTGAATGGAAGCAAGTGCGAGGCAAATGCAGTTGCAAAAAGTGGTCAGTCCCCTTTTCATGATACTCCATTGCAAATGAAAGCTCCTCTGCCTAATGGGCAGCCTTGTGGGAGTGGTGCAGGACAAAAGGGTTTAGATGCTAAATACCAGCCTAGGATAAGTGATCACGAGCTACAACAGATCTCCAGAGACCTAAATTCTGTTGTCACTCCTTTGTTTGAGAAAACATTGACCATTTCTGATGCTGACTACAAGCTGGGCCGCCTGGTGATACCCAAGAAATGTGCACAGGAATATTTCCCTCTAATTTCTGGGCCTGAAGGAGTCACTATAAGAATCCTGGATACAAGAGGAAGAGAATGGGTATTTCACTACCGTTATTGGAGCAATGCTAACAGCCAGATGTACGTACTAGATGGGCTTAAAGACTTTGTAATTTCAATGCAGTGGCAAGCAGTAACATTTTATCGGATAGAACCGAAGGGACAGTTGGTTCTGGGGCTCAGAAAGGCTTCAGTGACTCCACCATCTCACAAGGTATGGCATACTAAACTAACCTTGTCTCCAAGTGTATGTGTAAAACAGATTAGTGTGCTACATGAATAA 729 44.03 MNTSTIAPNQCDSPSWSTTLAESVHNTSSPCEVEESNNSDKVNGSKCEANAVAKSGQSPFHDTPLQMKAPLPNGQPCGSGAGQKGLDAKYQPRISDHELQQISRDLNSVVTPLFEKTLTISDADYKLGRLVIPKKCAQEYFPLISGPEGVTIRILDTRGREWVFHYRYWSNANSQMYVLDGLKDFVISMQWQAVTFYRIEPKGQLVLGLRKASVTPPSHKVWHTKLTLSPSVCVKQISVLHE* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3676944 3687513 - Vvi19g294 Vvi19g294 781793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g294 242 MobiDBLite consensus disorder prediction 1 62 - -
Vvi19g294 242 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 40 219 - -
Vvi19g294 242 SUPERFAMILY DNA-binding pseudobarrel domain 111 211 IPR015300 -
Vvi19g294 242 CDD B3_DNA 112 211 IPR003340 GO:0003677
Vvi19g294 242 Pfam B3 DNA binding domain 114 210 IPR003340 GO:0003677
Vvi19g294 242 SMART B3_2 114 213 IPR003340 GO:0003677
Vvi19g294 242 Gene3D - 92 215 IPR015300 -
Vvi19g294 242 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 40 219 - -
Vvi19g294 242 MobiDBLite consensus disorder prediction 1 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g294 - - - vvi:100854644 451.825
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004766 0 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14415 PF02362 B3 4.00E-12 CL0405 Vvi TF