Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g297 ATGTTGTCGGTATCGTCGCCGACGGTGGTGCGGAGCTCGCTGGAGGAGATGCTGGATTCGCTCCGGAAAAGGGACGAGAAGCCGAAGGACTTGCCGCCAGCGCTGCCGGCGCGGCCGACGTCGAGGTCGATGCGGCTGCCTTCTACCAGGCGGTCGTTGCCGGTAGACTTCAAGGTTGGAGGGGGCAATGCTGGACTGGATAGTCCTGTAGGAGGGGCTCAAGGGAAGGAAGATGTGAAGAGGAAGGGGAGAGAACTAGGGCTCAGAAGAGGCGGTTTGGGAAGCAAGAAGAGGATGAAGGCTGTTCAGCCCGGTGATTTGCCGTACGTTGAGGCGGTGGAAGAGAAGGCCGAGACTGAATGGGATGATAACGTCGGGTATTTTGTTAAGAAGAAACTTCCGGTCTGGTGTCGGCTCCCAAGTGGGCAGTGGGAATCAGGAACTGTACAATCAACAACAGGAGAGGAAGCGCTTGTTTTGCTCTCAGATGGGAGTGTTGTCAAAGTGTCAACAGGAGAGATTTTACCTGCAAACCCAGATGTCCTTGTGGGTGTGGATGATCTCATACAGCTTAGTTATTTGAATGAACCATCAGTTGTACACAATCTTCAGTACAGATATTCTCATGATATCATTTATAGTAAAGCAGGGCCTCTTTTGATTGCAGTCAATCCCTTCAAAGATGTCCCAATTTATGGGAATGACTTTGTCACAGCATATAGCCAGAAAGTTAAAGATAGCCCTCATGTTTATGCAATAGCAGACATTGCTTATGATGAGATGATGAGAGATGAAGTAAATCAATCCATCATCATAAGTGGCGAAATTGGTGCTGGAAAAACTGAGACAGCAAAAATTGCAATGCAATACCTGGCTGCACTTGGTGGAGGCAGCGATGGGATAGAGAATGAACTCACTCAGACAAGTTGTATCCTAGAAGCATTTGGGAATGCAAAAACATCAAGGAATAACAACTCTAGTCGATTTGGGAAGTCAATTGAACTTCATTTTAGTACATTTGGGAAAATATGTGGTGCTAAAATCCAAACTTTTCTGCTAGAAAAGCAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAGATAAACTGAACATTAAAATGGCTAGTGAGTACCACTATCTTAATCAAAGCAACTGCTTGGCAATTGATGATGTGGATGATGCTCGGAAATTTCATGTGCTTATGGGAGCCTTAGATATTGTTCAAATTTGCAAAGAAGATCAAGAGCATGCATTTTCAATGCTTGCTGCAGTGTTATGGCTGGGAAACATATCATTTCAAGTAGTTGACAGTGAAAATCATGTGGAGGTGGTTGCTAATGAAGCTGTTACCTGTGCTGCCCGGTTGATTGGTTGCAGTGCCCAGGAGCTGATGTTATCTTTATCTACCAATAAAGTCAAAGCTGGGAATGGTGATGCTGCCAAAAAATTAACGTTGCAGCAGGCAATTGATGCAAGAGATGTGATGGCGAAATTCATATATGCAAGCTTATTTGATTGGATTGTAGTACAAATCAACAAATCTCTTGAAGTGGGCAAACGACCCACTGGGAGATCCATAAGTATCCTAGATATGTATGGCTTTGGGACATTTCAGAAGAACAGCTTTGAACAACTCTGTATAAACTATGCAAATGAGAGGCTGCAACAGCATTTCAATCGTCATCTACTTAAACTCGAACAGGAGGAATATGAATTGGATGGGATTGATTGGAAAAGAGTTGATTTTGAAGACAATCATGAGTGTTTAGATCTCTTTGAAAAGAAACCTTTAGGGCTACTATCTTTATTGGATGAGGAGTCAAATGCTCCCATGGCCACTGATATGTCCTTTGCCAACAAACTTAAGCAGCATTTGGTTGGCAATCCCTGCTATAAAGGAGAAAACGGTGGAGCTTTCAGTATTCGTCATTATGCTGGAGAGGTTCTTTATGATACAAGTGGCTTCTTGGAAAAGAACAGAGATCCTCTTCACTCTGATTCGATCCAACTCCTCTCATCATGTAGTTGCAAGCTTCCTCAGTTGTTTGCCTCCAATTTGCTCGACCACTCCCAGAAGCAAGCTAGTCCTTTATCCTTAGGTGCATTTGATTCCCAGAAGCAAAGTGTTGGGACAAAGTTTAAGGATCAACTGTTCAAACTGATGCAGCAGTTGGAGAACACTTCTCCTCACTTCATTCATTGCATAAAACCTAATGATAAACAGCTTCCTGGCATGTATGAAAAGGATCTTGTCTTGGAGCAGCTCAGGTGTTGTGGAGTTTTGGAGGTAGTCAGGATCTCAAGATCTGGGTATCCTACTCGAATGACACATCAAGAATTTGCAAGAAGGTATGGGTTTCTACTTCCGAAGGACAATGAATACCAGGATCCATTAAGTATATCAGTTTCTGTTCTTCAGCAATTTAATATCCTTCCTGATCTGTATCAAGTTGGCTACACAAAATTATATTTCCGAACAGGACAGATTGATGAATTGGAGGATATGAGAAAACAAGTTCTGCAAGGCATAATTGTGGTTCAAAAACGCTTCCGTGGCCGCCAGGCTCGTCGTTATTTCTATGAACTCAAGGGAGGAGTAACCACACTGCAATCATTTGGTCATGGTGAAAATGCTAGAAGGGGGAATGATGTTTTGGTAAAGACTTGGAGAGCTGATATTCCCACACAGAAGCATATGAAACAGCAGGTTGCTCCACAAACACCTGATGAGGGGGCAATCATACATTTACAATCTGTAATCCGTGGGTTGTTGGCTCGAAAGCATTTTAATCACATGCAGGGCTCGAAAAAGCTGAATCTTGAGAATGCAAATTCTAGACAAAAGTCAGATAGGAGGATTTCAGATGTAAAGGATTTACCACAAGAGCAAGGCCAGGTTCTGCCTTCAGATTTGTCCAAACTTCAACACCGGGTTCTGAAGGCAGAAGCAACATTGGGGCAAAAGGAAGAAGAAAATGCTGCATTGCGAGAGCAGCTAAAACAATCTGAGGCAAAGTGGTCAGAGTATGAGGCAAAGATGAAAGCAATGGAGGAGACCTGGCAAAAACAGATGGCTTCTTTGCAGATGAGTCTGGCTGCTGCTAAGAAAAATCATGCTGCTGGTCAAGATGGAAGGCTTGATACACCTTCTTCGCCTGGCTATTATGATTCTGAGGGTACCCCATCCATGGAAACTCGAACTCCTGGTGCAAACACACCTGTCAAATTGTCTAATGTTGGAGCAGGGCGCGAGAGTAATGGCAACTTGAATACAGTCAGCCACCTGGCAAAGGAGTTTGAGCAGCGCAAACAGTCATTTGATGATGATGCCAAAACCCTCGTTGAGGTTAAATCTGGGCAACCCTCTTCAAATATGAATCATGATGAATTAAAGAAACTGAAGCAAAGGTTTGAGGCATGGAAGAAAGATTACAAGGTTCGGTTACGGGAGACAAAGGCTAGGCTTCATAAGCTTGGGCATTCTGAAGGGGAAAGAATTCGCCGTAAATGGTGGGGGAAGAGAATCTCAAAATCGACGTAG 3594 43.8 MLSVSSPTVVRSSLEEMLDSLRKRDEKPKDLPPALPARPTSRSMRLPSTRRSLPVDFKVGGGNAGLDSPVGGAQGKEDVKRKGRELGLRRGGLGSKKRMKAVQPGDLPYVEAVEEKAETEWDDNVGYFVKKKLPVWCRLPSGQWESGTVQSTTGEEALVLLSDGSVVKVSTGEILPANPDVLVGVDDLIQLSYLNEPSVVHNLQYRYSHDIIYSKAGPLLIAVNPFKDVPIYGNDFVTAYSQKVKDSPHVYAIADIAYDEMMRDEVNQSIIISGEIGAGKTETAKIAMQYLAALGGGSDGIENELTQTSCILEAFGNAKTSRNNNSSRFGKSIELHFSTFGKICGAKIQTFLLEKQSRVVKLADGERSYHIFYQLCAGAPSILKDKLNIKMASEYHYLNQSNCLAIDDVDDARKFHVLMGALDIVQICKEDQEHAFSMLAAVLWLGNISFQVVDSENHVEVVANEAVTCAARLIGCSAQELMLSLSTNKVKAGNGDAAKKLTLQQAIDARDVMAKFIYASLFDWIVVQINKSLEVGKRPTGRSISILDMYGFGTFQKNSFEQLCINYANERLQQHFNRHLLKLEQEEYELDGIDWKRVDFEDNHECLDLFEKKPLGLLSLLDEESNAPMATDMSFANKLKQHLVGNPCYKGENGGAFSIRHYAGEVLYDTSGFLEKNRDPLHSDSIQLLSSCSCKLPQLFASNLLDHSQKQASPLSLGAFDSQKQSVGTKFKDQLFKLMQQLENTSPHFIHCIKPNDKQLPGMYEKDLVLEQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLPKDNEYQDPLSISVSVLQQFNILPDLYQVGYTKLYFRTGQIDELEDMRKQVLQGIIVVQKRFRGRQARRYFYELKGGVTTLQSFGHGENARRGNDVLVKTWRADIPTQKHMKQQVAPQTPDEGAIIHLQSVIRGLLARKHFNHMQGSKKLNLENANSRQKSDRRISDVKDLPQEQGQVLPSDLSKLQHRVLKAEATLGQKEEENAALREQLKQSEAKWSEYEAKMKAMEETWQKQMASLQMSLAAAKKNHAAGQDGRLDTPSSPGYYDSEGTPSMETRTPGANTPVKLSNVGAGRESNGNLNTVSHLAKEFEQRKQSFDDDAKTLVEVKSGQPSSNMNHDELKKLKQRFEAWKKDYKVRLRETKARLHKLGHSEGERIRRKWWGKRISKST* 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3749994 3776743 + Vvi19g297 Vvi19g297 781796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g297 1197 MobiDBLite consensus disorder prediction 1071 1088 - -
Vvi19g297 1197 SMART iq_5 856 878 IPR000048 GO:0005515
Vvi19g297 1197 SMART iq_5 926 948 IPR000048 GO:0005515
Vvi19g297 1197 MobiDBLite consensus disorder prediction 1053 1088 - -
Vvi19g297 1197 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 130 179 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 MobiDBLite consensus disorder prediction 961 976 - -
Vvi19g297 1197 Pfam IQ calmodulin-binding motif 930 947 IPR000048 GO:0005515
Vvi19g297 1197 Pfam Myosin head (motor domain) 185 843 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 Gene3D - 789 856 - -
Vvi19g297 1197 ProSiteProfiles IQ motif profile. 859 886 IPR000048 GO:0005515
Vvi19g297 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 951 IPR027417 -
Vvi19g297 1197 Gene3D Kinesin motor domain 184 788 IPR036961 -
Vvi19g297 1197 ProSiteProfiles Myosin motor domain profile. 183 855 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 ProSiteProfiles IQ motif profile. 927 955 IPR000048 GO:0005515
Vvi19g297 1197 MobiDBLite consensus disorder prediction 16 32 - -
Vvi19g297 1197 MobiDBLite consensus disorder prediction 1 80 - -
Vvi19g297 1197 PANTHER MYOSIN-2 ISOFORM X1 129 1192 - -
Vvi19g297 1197 Gene3D - 859 956 - -
Vvi19g297 1197 SMART MYSc_2a 177 856 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 Coils Coil 989 1037 - -
Vvi19g297 1197 CDD MYSc_Myo8 197 843 IPR036022 -
Vvi19g297 1197 Gene3D - 555 745 - -
Vvi19g297 1197 PANTHER MYOSIN 129 1192 - -
Vvi19g297 1197 Gene3D Myosin VI head, motor domain, U50 subdomain 424 532 - -
Vvi19g297 1197 PRINTS Myosin heavy chain signature 213 232 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 PRINTS Myosin heavy chain signature 267 292 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 PRINTS Myosin heavy chain signature 310 337 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 PRINTS Myosin heavy chain signature 543 571 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 PRINTS Myosin heavy chain signature 596 624 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi19g297 1197 MobiDBLite consensus disorder prediction 959 984 - -
Vvi19g297 1197 Gene3D - 367 423 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g297 K10357 - vvi:100241905 2336.61