Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g300 ATGGGTGATTCTTCGAGGGAGGATGCCAGCAATACTCTTAGAGTGCTTGTTGCTACGGATTGCCATCTAGGCTATATGGAGAAGGATGAAGTACGTAGGCATGATTCTTTCCAGGCATTTGAGGAAATATGCTCAATAGCAGATCAAAAGCAGGTGGACTTCTTACTCCTTGGTGGTGATCTTTTCCATGAGAATAAGCCCTCAAGGTCAACATTGGTTAAGACCATTGAGATCCTCCGTCGTTATACCCTCAATGATCGTCCGGTGCAGTTTGAAGTTGTCAGTGATCAGACTGTGAACTTCGCAAACATATTTGGTCATGTGAATTATGAAGATCCTCACTTCAATGTCGGCTTGCCAGTTTTTAGTATTCATGGAAATCATGATGATCCTGCTGGAGTGGACAACCTTTCTGCTGTTGATATTCTTTCGGCATGCAATCTGGTGAACTATTTTGGGAAAATGGTTCTTGGAGGTTCTGGTGTTGGTCAAATCACTCTCTACCCTATTCTTATTAGGAAGGGTTCAACGCTTGTGGCTCTCTATGGTCTTGGGAATATTCGAGATGAACGCCTCAATAGGATGTTTCAGACACCACATGCTGTGCAATGGATGCAGCCCGAAGCTCAAGAAGGGTGTCAAGTGTCAGACTGGTTCAACATTTTGGTACTTCATCAAAACAGAGTAAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGGAGGTTGCAGGTATGGGTTTCCACATTACCCAACCAGGCTCTTCCATTGCAACATCACTGATTGATGGAGAGTCAAAGCCGAAGCATGTACTACTTTTAGAAATTAAGGGAAATCAATACCGCCCAACCAAGATCCCATTGAAGTCAGTGAGGCCTTTTGAATACACTGAGATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTGGTCAGAAACCTGATTGACAAAGCTAGTGGAAAGTTTGTTAATGGATCAGAGCTCAAGCTTCCACTAGTCCGGATAAAGGTAGATTACTCTGGATTTATGACAATAAATCCTCAAAGGTTTGGGCAAAAGTATGTGGGCAAGGTTGCAAATCCCCAAGATATTCTTATTTTCACAAAGGCTTCAAGAAAAGGTCGTAGTGAAGCCAAAATTGATGACTCTGAGCGGCTTCGCCCAGAAGAATTGAATCAACAAAATATAGAAGCCTTAGTTGCTGAGAATAATCTGAAAATGGAGATCCTTCCAGTCAATGATTTGGATGTTGCATTGCACAATTTTGTCAACAAAGATGACAAAATGGCTTTCTATTCTTGTGTTCAATATAATCTGGAAGAGACACGTAGTAAAATTGCTCGTGATTCAGATCCTTTAAAGTTTGAAGAGGAAGATTTAATTCTTAAAGTTGGAGAGTGCTTGGAGGAACGGGTCAAGGAAAGGTCAGTGCACTCAAAGGAAACCCCACAGTTCATGTCAAGTGCTCGGTCATTGGAGAATATCAGAAGTAAAGGTACTGCTGAAACTGGAAGTGCAGTTTCCTTTAGTGATGATGAAGACCCCACCCAGTTATCTGGGTCAAAATCTGCCACTAGGGGCAGAAAAGGGTCATCAGCAACCTTTAAGTCCTCCCATGATGCTTCTGAACAAGGTAAAGGTAAATCTTCTACAAGAGGAAGGGGCAGGGGCAGGGGCAGGGGGAGGAGCTCCAGTACCTTGAAGCAGATGACACTTGATTCAAGTCTGGGATTCCGCCATTCTGAAAGATCTGCATCAGTTGCTGCGACAGCTGCTGTTCGAAACCTTGCTGATGATGAGGACAATGTGGAGTCCAGTTCAAGCGATGAAGCAGGGAAATATGGAATTAATGAGGTTGATGACAGCTCGGAAAATGATGAGAATCTCCAAGGCAAAGGACGCAAAAGAGCTGCTCCAAGGGGAAGGGGTAGAGGTGCTACTACATCCTCTAAGCGAGGAAGGAAATCAGATTCCACTTCAATTCAGAGAATGCTTATGAACAAAGATGATGATGATGATGATGAGGATGACATGTCAAAGAGATTAAATAAGCCTCAGCCTCGGGTAACAAGGAATTATGGTGCTCTAAGAAGGTAA 2196 42.81 MGDSSREDASNTLRVLVATDCHLGYMEKDEVRRHDSFQAFEEICSIADQKQVDFLLLGGDLFHENKPSRSTLVKTIEILRRYTLNDRPVQFEVVSDQTVNFANIFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGQITLYPILIRKGSTLVALYGLGNIRDERLNRMFQTPHAVQWMQPEAQEGCQVSDWFNILVLHQNRVKTNPKNAISEHFLPRFLDFIVWGHEHECLVDPQEVAGMGFHITQPGSSIATSLIDGESKPKHVLLLEIKGNQYRPTKIPLKSVRPFEYTEIVLKDEADIDPNDQTSILEHLDKVVRNLIDKASGKFVNGSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFTKASRKGRSEAKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNLEETRSKIARDSDPLKFEEEDLILKVGECLEERVKERSVHSKETPQFMSSARSLENIRSKGTAETGSAVSFSDDEDPTQLSGSKSATRGRKGSSATFKSSHDASEQGKGKSSTRGRGRGRGRGRSSSTLKQMTLDSSLGFRHSERSASVAATAAVRNLADDEDNVESSSSDEAGKYGINEVDDSSENDENLQGKGRKRAAPRGRGRGATTSSKRGRKSDSTSIQRMLMNKDDDDDDEDDMSKRLNKPQPRVTRNYGALRR* 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3785443 3802981 - Vvi19g300 Vvi19g300 781799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g300 731 SMART Mre11_DNA_bind_2 302 455 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Vvi19g300 731 Gene3D Mre11, capping domain 314 412 IPR038487 -
Vvi19g300 731 MobiDBLite consensus disorder prediction 647 667 - -
Vvi19g300 731 SUPERFAMILY Metallo-dependent phosphatases 13 346 IPR029052 -
Vvi19g300 731 Pfam Calcineurin-like phosphoesterase 13 257 IPR004843 GO:0016787
Vvi19g300 731 Pfam Mre11 DNA-binding presumed domain 303 455 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Vvi19g300 731 TIGRFAM mre11: DNA repair protein (mre11) 11 402 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Vvi19g300 731 CDD MPP_Mre11_N 14 282 IPR041796 -
Vvi19g300 731 MobiDBLite consensus disorder prediction 514 573 - -
Vvi19g300 731 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 7 706 - -
Vvi19g300 731 MobiDBLite consensus disorder prediction 629 731 - -
Vvi19g300 731 Gene3D - 8 313 IPR029052 -
Vvi19g300 731 PIRSF DSB_repair_MRE11 1 720 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Vvi19g300 731 MobiDBLite consensus disorder prediction 506 615 - -
Vvi19g300 731 MobiDBLite consensus disorder prediction 595 614 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g300 K10865 MRE11; double-strand break repair protein MRE11 - vvi:100252167 1372.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g300 . . . . . . . . . . . . . . . Cpe06g00719 . . . . . . . . Cla11g01805 Cam11g1871 . Cco11g1901 Clacu11g2035 Cmu11g1840 Cre11g2246 . . Cone14ag1088 Cone15ag1100 Lsi04g01279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010909 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28