Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g301 ATGGCGAAGCGGACGTTCCACGTGGTCGGCGAAGAAGGGAGCCGGCTGCACGACGCCAGCGCTAGCACGGTGGCCCTCCGGTACTTGAAGGCGAAAAAGGGCTTCTTCTTCGACCTGTTCGTCATCCTCCCTCTACCCCAGATTGTACTGTGGGTGGCAATTCCCTCCTTGTTGGAGAGAGGCTTAACAACAACAGTGATGACAGTGCTCTTGATCATATTTCTCTTCCAATACCTCCCCAAAATCTACCACTCAGTCTGCCTACTACTCCGAATGCAAAACGTTTCGGGCTACATATTCGGCACCATTTGGTGGGGAATCGTCCTCAACATGATTGCCTACTTTGTCGCCTCCCATGCAGCAGGAGCATGTTGGTACTTGTTAGGCCTGCAGAGAGCTGCAAAATGCCTGAAAGAGGAATGTGCAGTGGCAAATTATTGTAGCACAAAAACACTTGCTTGTAAAAATCCTATCTACTATGGAACAACTAGCCTGTTGAAAGATAGAGCAAGACTTGCATGGGCAAACAACAAGCACGCGCGGTCTACTTGCCTGGACAGTGCTGATAATTTTGAATATGGAGGTTATAGATGGACAATTCAGCTTGTTACCAACGATAATCGCTTGGAAAAGATTCTGTTTCCACTTTTCTGGGGCCTAATGACACTAAGTACTTTCGGAAACTTGGAGAGCACCACAGAATGGTTGGAAGTCATATTCAATATTATTGTTCTCACCAGTGGACTCATTCTGGTCACTATGTTGATTGGAAATATTAAGGTGTTCTTGCATGCGACCACATCAAAGAAACAAACAATGCAATTAAAAATGAGGAACATAGAGTGGTGGATGAGGAGGAGGAAATTGCCTTTGGGTTTCAGGCAGAGAGTGCGTAATTATGAGAGGCAAAAGTGGGCAGCGATGCGTGGCGTTGATGAATGCCAGATGACGAAGAACCTCCCCGAGGGCCTCAGGAGGGACATCAAGTACCATCTCTGTCTGGACTTGGTGAGACAGGTGCCATTGTTTCAACACATGGATGATCTAGTCCTGGAGAACATATGCGATCGTGTGAAGTCCCTCATATTCACTAAGGGGGAAGTAATAACAAGAGAGGGTGACCCAGTCCAGAGAATGCTGTTTGTAGTAAGGGGTCATCTCCAGAGCAGTCAAGTACTCCGAGATGGTGTGAAAAGTTGTTGCATGTTAGGCCCTGGAAACTTCAGTGGGGACGAGCTCTTGTCATGGTGCCTTAGAAGACCCTTCATTGAAAGGCTACCCCCATCTTCATCAACCCTAATCACCCTTGAAACCACTGAAGCATTTGGGCTAGAAGCTGACGACGTGAAGTATGTCACACAACATTTTAGATACACATTTGTGAAGGAAAGAGTCAAGAGAAGTGCGAGATACTACTCGCCTGGGTGGAGGACTTGGGCAGCTGTGGCCATTCAGTTGGCTTGGAGGAGGTACAAACACCGGTTGACACTCACTTCATTGTCATTTATCCGGCCAAGAAGACCCGTATCACGGTGCTCTTCGCTAGGGGAGGACAGACTCCGGCTTTATACAGCCATGTTAACTTCACCAAAGCCAAATCAAGATGATTTCGACTTCTGA 1620 47.41 MAKRTFHVVGEEGSRLHDASASTVALRYLKAKKGFFFDLFVILPLPQIVLWVAIPSLLERGLTTTVMTVLLIIFLFQYLPKIYHSVCLLLRMQNVSGYIFGTIWWGIVLNMIAYFVASHAAGACWYLLGLQRAAKCLKEECAVANYCSTKTLACKNPIYYGTTSLLKDRARLAWANNKHARSTCLDSADNFEYGGYRWTIQLVTNDNRLEKILFPLFWGLMTLSTFGNLESTTEWLEVIFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQTMQLKMRNIEWWMRRRKLPLGFRQRVRNYERQKWAAMRGVDECQMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEADDVKYVTQHFRYTFVKERVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCSSLGEDRLRLYTAMLTSPKPNQDDFDF* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3814609 3826987 + Vvi19g301 Vvi19g301 781800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g301 539 ProSiteProfiles cAMP/cGMP binding motif profile. 342 452 IPR000595 -
Vvi19g301 539 Pfam Cyclic nucleotide-binding domain 363 450 IPR000595 -
Vvi19g301 539 Gene3D Helix hairpin bin 267 333 - -
Vvi19g301 539 SUPERFAMILY Voltage-gated potassium channels 25 263 - -
Vvi19g301 539 CDD CAP_ED 342 448 IPR000595 -
Vvi19g301 539 SMART cnmp_10 342 471 IPR000595 -
Vvi19g301 539 Gene3D Jelly Rolls 340 458 IPR014710 -
Vvi19g301 539 Pfam Ion transport protein 34 259 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi19g301 539 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 22 536 - -
Vvi19g301 539 SUPERFAMILY cAMP-binding domain-like 268 456 IPR018490 -
Vvi19g301 539 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 4-LIKE 22 536 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g301 K05391 - vvi:100265816 1087.02