Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g303 ATGGGTCGCTTCTTCTCCTGCTTGACCAGAGGCGGCTCTGCCACCAGCAAGACTAAGGACTCTTCCGAAGGAGACCACTCCGCGGGGGCCGATGAGGGAGGGGCAGTGGCGGCGGCGGCGGTGGTGGTGGAGCTGTTCTCGTCGCAGGGGTGCGCGACGTCGCCGGAGGCGGAGCTGCTGATTTCTAGGCTAGGGAGGGGGGATTTTGGGCTGGGCCGGCCGGTTATGGTGTTGGCGTACCATGTGGACTACTGGGACCATATGGGCTGGAAGGACCCATTTGGGTCGAGCCAGTGGACCGTGCGGCAAAAGGCCTATGTTGAGGCCCTAAAGCTTGACACCTTGTTCACTCCCCAGGTTGTGGTCCAGGGGAAGGCCCACTGCGTTGGGAATGACGAGGAGGCTTTGCTCTCATCCATTGGAGCTGCACCTCCAATCCCTGCTCCTACCCTCCAGGCAACCTTCCAAAGGCCTTCACCGGACACCTTACGAGTCTCCATAACAGGTGCTCTAAGGACAAAGGTGGACAGTAATGGTGCTGATGTCCTGGTGGCTCTGTATGAGAATGGGCTGATGACCGACTGCCCAAAGGGAGAGAACAAAGGCCGTGTCCTATCCAATGACTTTGTAGTTCGGAGACTTGAGAAGCTCTGCACTGTTAAAGACATCTCTGCCAAGAAGACGGTAACTGGAACTGTTAACCTCACTCTGTGGGATAGTTTCAATAGCAGCAAATGTGGCATTGCTGTCTTTGTCCAAAACAAGTCTTATCATATTTTTGGTTCTCAGAACTTTGAACTGCCTGATAATCTATAG 816 55.02 MGRFFSCLTRGGSATSKTKDSSEGDHSAGADEGGAVAAAAVVVELFSSQGCATSPEAELLISRLGRGDFGLGRPVMVLAYHVDYWDHMGWKDPFGSSQWTVRQKAYVEALKLDTLFTPQVVVQGKAHCVGNDEEALLSSIGAAPPIPAPTLQATFQRPSPDTLRVSITGALRTKVDSNGADVLVALYENGLMTDCPKGENKGRVLSNDFVVRRLEKLCTVKDISAKKTVTGTVNLTLWDSFNSSKCGIAVFVQNKSYHIFGSQNFELPDNL* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3843833 3846216 + Vvi19g303 Vvi19g303 781802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g303 271 SUPERFAMILY Thioredoxin-like 39 256 IPR036249 -
Vvi19g303 271 MobiDBLite consensus disorder prediction 1 30 - -
Vvi19g303 271 PANTHER - 3 271 IPR010634 -
Vvi19g303 271 Pfam Protein of unknown function (DUF1223) 42 253 IPR010634 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g303 - - - vvi:100267563 523.857
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g303 . . Bda07g00270 . . . . . . . . . . . . Cpe06g00721 Cpe02g00726 . . . . . . . Cla11g01807 Cam11g1873 Cec11g1896 Cco11g1904 Clacu11g2037 Cmu11g1842 Cre11g2247 . . Cone14ag1091 Cone15ag1102 Lsi04g01277 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006972 1 1 1 2 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 34