Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g305 ATGAGCTCAACAATTAGAGCTTGGATTGTGGCTGCCAGTGTTGGAGCAGTGGAGGCATTGAAAGATGAAGGGTTGTGCAGATGGAATCATGCTCTTGGCTTGCTGCAGCAGCATGGCAGGACCAATGTAGGGTCTTTTTCGCAGGCCAAGAGGCTGGTTTCTTCACCTCCTTTGGTGCTATCTAATAAGATGAGAAAAGAGAAGATGAAGAAGGCTGAGGAATCCCTGAGAAAAGTAATGTATTTGAGCTGCTGGGGTCCTTATTGA 267 46.82 MSSTIRAWIVAASVGAVEALKDEGLCRWNHALGLLQQHGRTNVGSFSQAKRLVSSPPLVLSNKMRKEKMKKAEESLRKVMYLSCWGPY* 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3858391 3858658 + Vvi19g305 Vvi19g305 781804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g305 88 PANTHER DUF3774 DOMAIN PROTEIN-RELATED 1 87 IPR022251 -
Vvi19g305 88 PANTHER FAMILY PROTEIN, PUTATIVE-RELATED 1 87 - -
Vvi19g305 88 Pfam Wound-induced protein 10 87 IPR022251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g305 - - - vvi:100248633 169.474
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g639 Vvi19g305 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g305 . . Bda07g00269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0109 Cone9ag0129 Cone14ag1094 Cone15ag1104 . . . . . . . . Bpe11g00507 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000404 6 4 5 4 3 4 4 2 4 4 3 4 4 5 4 6 4 10 3 2 3 5 5 1 3 5 5 2 4 3 121