Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g311 ATGGATGCCACAACGATGAATCCAGAAGGCCGGGCATTTTCTATCAAACTATGGCCCCCTAGCCAGACCACTCGGCTACTGCTTGTGGAACGAATGGCAAACAATCTTTCCACTCCATCCATTTTCACTCGAGAGTATGGTAGTCTCAGCAAAGAGGAAGTAAGGGAGAATGCCAAACAGATCGAAAGGCCCTATAACCAAGCTGAGGAGCTTTTGAGGCCATTAAAAGAGCCAGGAAATTCTTATACTAAGATATGTTTCAGCAATCGAAGCTTTGGTTTAGGCGCAGCCCGTGTTGCAGAGCCTATCTTGGCTTCTCTCAAGGATCAGTTAAAGGAAGTGGACCTGTCAGATTTTATTGCTGGGAGATCGGAAGGGGAAGCTCTTGAAGTCATGGCTATATTTTCTGAGGCTCTTGAAGGTTGTGTTTTGAAGTCTCTGGACCTCTCAAACAATGCTTTGGGTGAGAAGGGTGTTAGGGCGTTTGGGGCGCTCCTGAAATCACAAAGTAGCTTGGAGGAGCTCTATTTAATGAATGATGGGATCTCAGAGGAAGCTGCTCGAGCAGTTTGTGAGTTAATCCCTTCTACTGAGAAGCTTAGGGTCCTTCAATTTCATAATAATATGACAGGAGATGAAGGGGCACTTGCTATTTCTGAGGTAGCTTACCTGAGCTACCTGAACTTGGAAGATGAGGGTGCAGTTGCTATAGCCAATGTTCTTAAGGAATCTGCTTCTGCACTGGAAGTCTTGGAGATGGCTGGAAATGATATAACAGCTGAAGCTGCTCCTGCTTTAGCTGCTTGTATAGCAGCAAAGCAGCTTATCACAAAGCTGAACTTGGCCGACACTGAACTGAGGGATGAAGGTGCTATCCAAATTAGCAAGGCATTGGAAGATGGCGATGCTCAATTGAAGGGAGTCGACTTGAGCTCCAATTTCATGAGAAGGGCTGGGGCTAGGTGCTTGACTCGCGCTGTGGTGCATAAGCCTGGGTTAAAATTGCTTAACATGAATGGAAATTTCATCTCTGATGAGGGCATTGATGAGGTGAAGAATATATTTAATGAATTTCCTAATGTTCTTGGATCCTTGGATGAGAATGACCCTGAAGGAGAAGATGATAACGAATCTGGAGAGGGTGAAGATGAAGGGGATGAATTAGAATCGAAATTGAAGAATCTCGAGGTCCATCAGGAAGACTAG 1206 45.19 MDATTMNPEGRAFSIKLWPPSQTTRLLLVERMANNLSTPSIFTREYGSLSKEEVRENAKQIERPYNQAEELLRPLKEPGNSYTKICFSNRSFGLGAARVAEPILASLKDQLKEVDLSDFIAGRSEGEALEVMAIFSEALEGCVLKSLDLSNNALGEKGVRAFGALLKSQSSLEELYLMNDGISEEAARAVCELIPSTEKLRVLQFHNNMTGDEGALAISEVAYLSYLNLEDEGAVAIANVLKESASALEVLEMAGNDITAEAAPALAACIAAKQLITKLNLADTELRDEGAIQISKALEDGDAQLKGVDLSSNFMRRAGARCLTRAVVHKPGLKLLNMNGNFISDEGIDEVKNIFNEFPNVLGSLDENDPEGEDDNESGEGEDEGDELESKLKNLEVHQED* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3894330 3896647 - Vvi19g311 Vvi19g311 781810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g311 401 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 223 401 - -
Vvi19g311 401 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 66 221 - -
Vvi19g311 401 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 1 62 - -
Vvi19g311 401 SMART LRR_RI_2 197 226 - -
Vvi19g311 401 SMART LRR_RI_2 141 168 - -
Vvi19g311 401 SMART LRR_RI_2 169 196 - -
Vvi19g311 401 SMART LRR_RI_2 245 272 - -
Vvi19g311 401 SMART LRR_RI_2 330 357 - -
Vvi19g311 401 SMART LRR_RI_2 273 300 - -
Vvi19g311 401 MobiDBLite consensus disorder prediction 362 401 - -
Vvi19g311 401 SUPERFAMILY RNI-like 68 375 - -
Vvi19g311 401 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 66 221 IPR045203 GO:0005096
Vvi19g311 401 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 1 62 IPR045203 GO:0005096
Vvi19g311 401 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 223 401 IPR045203 GO:0005096
Vvi19g311 401 MobiDBLite consensus disorder prediction 386 401 - -
Vvi19g311 401 Gene3D Ribonuclease Inhibitor 223 361 IPR032675 -
Vvi19g311 401 MobiDBLite consensus disorder prediction 367 385 - -
Vvi19g311 401 Coils Coil 51 71 - -
Vvi19g311 401 Gene3D Ribonuclease Inhibitor 70 222 IPR032675 -
Vvi19g311 401 Gene3D WPP domain 14 69 IPR038214 -
Vvi19g311 401 Pfam WPP domain 14 68 IPR025265 -
Vvi19g311 401 Pfam Leucine Rich repeat 275 294 IPR001611 GO:0005515
Vvi19g311 401 Pfam Leucine Rich repeat 144 162 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g311 K14319 RANGAP1; Ran GTPase-activating protein 1 - vvi:100259658 331.643
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0234 Cone4ag0224 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .