Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g315 ATGGCTGCCTCCACTCTCTCCCCTGCAACCTCTTCTCAGCTGTGCTCTATCAGGAATGGGGTGTTGTCACCATCCCATGCTCTGCTGCCCAAGCTCACAAGGACGAGTCCATTTGTGGGGAAGGGAAAGGGCTTGAAGATCAAGTGTCAGGCCACCAGCATTCCGGCCGATCGAGTTCCTGACATGGGCAAGAGGAAGCTCATGAACTTGCTTTTGTTGGGTGCTATTTCCCTCCCCTCAGCTGGCATGTTGATTCCTTATGCCACCTTCTTTGCACCTCCTGGAACAGGATCTGCTGGAGGTGGTATTGTGGCCAAGGATGCACTTGGAAATGATGTTATTGCAGATGAATGGCTTAAGACTCATGGCCCTGGTGACAGAACCCTAACACAAGGGTTGAAGGGAGACCCCACCTACCTTGTTGTGGAGAATGACAAAACCCTTGCCACATATGGTATTAATGCAGTCTGCACCCATCTTGGGTGTGTTGTGCCGTGGAATGCAGCTGAGAACAAGTTCATCTGCCCATGCCATGGATCTCAGTACAACAACCAAGGCAGGGTTGTCAGAGGACCTGCTCCTCTGTCGTTGGCGCTGGCACATGCAGATATTGATGATGGGAAGGTATTGTTTGTTCCTTGGGTTGAGACAGATTTCAGAACAGGTGAAGATCCATGGTGGGCCTAA 687 51.24 MAASTLSPATSSQLCSIRNGVLSPSHALLPKLTRTSPFVGKGKGLKIKCQATSIPADRVPDMGKRKLMNLLLLGAISLPSAGMLIPYATFFAPPGTGSAGGGIVAKDALGNDVIADEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVLFVPWVETDFRTGEDPWWA* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3942746 3944969 - Vvi19g315 Vvi19g315 781814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g315 228 Gene3D Single helix bin 49 93 - -
Vvi19g315 228 SUPERFAMILY ISP domain 57 227 IPR036922 GO:0051537
Vvi19g315 228 PRINTS Rieske 2Fe-2S subunit signature 152 163 IPR005805 GO:0016020|GO:0051537
Vvi19g315 228 PRINTS Rieske 2Fe-2S subunit signature 173 185 IPR005805 GO:0016020|GO:0051537
Vvi19g315 228 PRINTS Rieske 2Fe-2S subunit signature 185 197 IPR005805 GO:0016020|GO:0051537
Vvi19g315 228 Hamap Cytochrome b6-f complex iron-sulfur subunit [petC]. 51 228 IPR023960 GO:0016020|GO:0045158|GO:0051537
Vvi19g315 228 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 225 IPR014349 GO:0051537
Vvi19g315 228 PANTHER CYTOCHROME B6-F COMPLEX IRON-SULFUR SUBUNIT 1 225 - -
Vvi19g315 228 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 115 211 IPR017941 GO:0051537
Vvi19g315 228 Gene3D - 94 228 IPR036922 GO:0051537
Vvi19g315 228 Pfam Rieske [2Fe-2S] domain 133 197 IPR017941 GO:0051537
Vvi19g315 228 CDD Rieske_cytochrome_b6f 103 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g315 K02636 petC; cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6] - vvi:100258879 473.781
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g602 Vvi19g315 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1097 Cone15ag1107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005070 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 39