Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g317 ATGCTGAGGCTTTGCATTTGTGGACCAATCAAAAGTGGATACTCTGATTTCATTTGGTTTTCAGGAAGACATTTCTCGGAAGGCATTGAGAGCATCGGTAAAATTTCAGAAGCAACTAATTGGATATTTAGCAATCCTGATGCTGCTAATTCATCAGATATGGATGCTACAACAAGCAGTACTCCTACTGCTGATGTTGGATTGCCTGATGGAGGAGGAAGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAACGATGACAAGGTTGGGGCTTCTATTAATCCCCCCAAGGATATGGGATATTTATATTTCTTTGAGAGACTGAGCAGTTGA 399 41.85 MLRLCICGPIKSGYSDFIWFSGRHFSEGIESIGKISEATNWIFSNPDAANSSDMDATTSSTPTADVGLPDGGGRYRLIGLVSHIGTSTQCGHYVAHIYKDGRWVIFNDDKVGASINPPKDMGYLYFFERLSS* 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4088498 4092360 - Vvi19g317 Vvi19g317 781816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g317 132 Gene3D Cysteine proteinases 36 131 - -
Vvi19g317 132 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 132 - -
Vvi19g317 132 Pfam Ubiquitin carboxyl-terminal hydrolase 61 127 IPR001394 GO:0004843|GO:0016579
Vvi19g317 132 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 75 93 IPR018200 GO:0004843|GO:0006511
Vvi19g317 132 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 130 IPR028889 -
Vvi19g317 132 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 132 - -
Vvi19g317 132 SUPERFAMILY Cysteine proteinases 32 130 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g317 K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12] - vvi:100264052 201.445
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g317 . . . . . . . . . . . . . . . . Cpe02g00728 . . . . . . . Cla11g01809 Cam11g1875 Cec11g1898 Cco11g1906 Clacu11g2039 Cmu11g1844 Cre11g2249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031224 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 2