Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g32 | ATGAAGATTCAGTGCAACGTGTGCGAGGCGGCGGAGGCCAACGTGCTGTGCTGCGCCGACGAAGCGGCGCTCTGCTGGGCCTGCGACGAGAAGGTTCACGCGGCGAACAAGCTCGCGAGCAAGCACCAGAGGGTTCCTCTCTCCACCTCGTCTTCTCAGATGCCCAAGTGCGACATCTGCCAGGAGACAGTTGGCTATTTCTTCTGCCTAGAAGACAGAGCTTTACTCTGCAGGAAATGTGATGTTTCCATACACACGGCGAATACATATGTTTCAGCTCACCAGAGGTTTCTGCTGACTGGAGTGAAAGTAGGGCTTGAACCTACACAACCCGGTTCATCCTCTTCCATGGGGAAATCAAATCTTGTTGGGAAGCACTCAGAAACTGAATCTCCTTCTGCGTCCAGGAGAGGTGCCCCTATGCCATTGACCTGTGATTACAACAAAACGTTATCCATCCAAGCTGGTGGAGCTGGGGATTTTGTGCCAACTAAGGTTTCATTTGCTGGGGGTTCTGGATCAACTGAAAGCATTCCACAGTGGCATATAGATGAACTTTTTGGACTAAATGAATTCAATCAGACCTATGACTGCATGGATAATGGAACATCCAAGGCTGATATTGGTAAGCTCGGTGACTCTGATTGCTCACCAACTTTAAGAGCTGCTGATGAAGAGCTGAACTTCGATGATTGCTTAGGTCAGGTGCCAGAGACAACTTGGATGGTGCCTCAGATCTCGTCACCACCTACAGCCTCAGGACTATACTGGCCTAAAAGTTCTCAAATTTCATCCGATACTTCTGTTTTTGTGCCTGACATATGCTATTCACCTGTGCAAATGCAAAATGAATCTGCCACCAAATGTCGGAGGCAATTCTGA | 882 | 48.87 | MKIQCNVCEAAEANVLCCADEAALCWACDEKVHAANKLASKHQRVPLSTSSSQMPKCDICQETVGYFFCLEDRALLCRKCDVSIHTANTYVSAHQRFLLTGVKVGLEPTQPGSSSSMGKSNLVGKHSETESPSASRRGAPMPLTCDYNKTLSIQAGGAGDFVPTKVSFAGGSGSTESIPQWHIDELFGLNEFNQTYDCMDNGTSKADIGKLGDSDCSPTLRAADEELNFDDCLGQVPETTWMVPQISSPPTASGLYWPKSSQISSDTSVFVPDICYSPVQMQNESATKCRRQF* | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 356888 | 371743 | + | Vvi19g32 | Vvi19g32 | 781531 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g32 | 293 | MobiDBLite | consensus disorder prediction | 109 | 139 | - | - | |
Vvi19g32 | 293 | SUPERFAMILY | B-box zinc-binding domain | 45 | 94 | - | - | |
Vvi19g32 | 293 | MobiDBLite | consensus disorder prediction | 109 | 129 | - | - | |
Vvi19g32 | 293 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Vvi19g32 | 293 | PANTHER | B-BOX ZINC FINGER PROTEIN 18 | 1 | 283 | - | - | |
Vvi19g32 | 293 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Vvi19g32 | 293 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Vvi19g32 | 293 | Pfam | B-box zinc finger | 53 | 94 | IPR000315 | GO:0008270 | |
Vvi19g32 | 293 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 283 | - | - | |
Vvi19g32 | 293 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Vvi19g32 | 293 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Vvi19g32 | 293 | Gene3D | Classic Zinc Finger | 1 | 93 | - | - | |
Vvi19g32 | 293 | CDD | Bbox1_BBX-like | 56 | 99 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14417 | PF00643 | zf-B_box | 2.70E-07 | No_clan | Vvi | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g32 | - | - | vvi:100260711 | 611.298 |