Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g32 ATGAAGATTCAGTGCAACGTGTGCGAGGCGGCGGAGGCCAACGTGCTGTGCTGCGCCGACGAAGCGGCGCTCTGCTGGGCCTGCGACGAGAAGGTTCACGCGGCGAACAAGCTCGCGAGCAAGCACCAGAGGGTTCCTCTCTCCACCTCGTCTTCTCAGATGCCCAAGTGCGACATCTGCCAGGAGACAGTTGGCTATTTCTTCTGCCTAGAAGACAGAGCTTTACTCTGCAGGAAATGTGATGTTTCCATACACACGGCGAATACATATGTTTCAGCTCACCAGAGGTTTCTGCTGACTGGAGTGAAAGTAGGGCTTGAACCTACACAACCCGGTTCATCCTCTTCCATGGGGAAATCAAATCTTGTTGGGAAGCACTCAGAAACTGAATCTCCTTCTGCGTCCAGGAGAGGTGCCCCTATGCCATTGACCTGTGATTACAACAAAACGTTATCCATCCAAGCTGGTGGAGCTGGGGATTTTGTGCCAACTAAGGTTTCATTTGCTGGGGGTTCTGGATCAACTGAAAGCATTCCACAGTGGCATATAGATGAACTTTTTGGACTAAATGAATTCAATCAGACCTATGACTGCATGGATAATGGAACATCCAAGGCTGATATTGGTAAGCTCGGTGACTCTGATTGCTCACCAACTTTAAGAGCTGCTGATGAAGAGCTGAACTTCGATGATTGCTTAGGTCAGGTGCCAGAGACAACTTGGATGGTGCCTCAGATCTCGTCACCACCTACAGCCTCAGGACTATACTGGCCTAAAAGTTCTCAAATTTCATCCGATACTTCTGTTTTTGTGCCTGACATATGCTATTCACCTGTGCAAATGCAAAATGAATCTGCCACCAAATGTCGGAGGCAATTCTGA 882 48.87 MKIQCNVCEAAEANVLCCADEAALCWACDEKVHAANKLASKHQRVPLSTSSSQMPKCDICQETVGYFFCLEDRALLCRKCDVSIHTANTYVSAHQRFLLTGVKVGLEPTQPGSSSSMGKSNLVGKHSETESPSASRRGAPMPLTCDYNKTLSIQAGGAGDFVPTKVSFAGGSGSTESIPQWHIDELFGLNEFNQTYDCMDNGTSKADIGKLGDSDCSPTLRAADEELNFDDCLGQVPETTWMVPQISSPPTASGLYWPKSSQISSDTSVFVPDICYSPVQMQNESATKCRRQF* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 356888 371743 + Vvi19g32 Vvi19g32 781531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g32 293 MobiDBLite consensus disorder prediction 109 139 - -
Vvi19g32 293 SUPERFAMILY B-box zinc-binding domain 45 94 - -
Vvi19g32 293 MobiDBLite consensus disorder prediction 109 129 - -
Vvi19g32 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi19g32 293 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 283 - -
Vvi19g32 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vvi19g32 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi19g32 293 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Vvi19g32 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 283 - -
Vvi19g32 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vvi19g32 293 CDD Bbox1_BBX-like 5 47 - -
Vvi19g32 293 Gene3D Classic Zinc Finger 1 93 - -
Vvi19g32 293 CDD Bbox1_BBX-like 56 99 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14417 PF00643 zf-B_box 2.70E-07 No_clan Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g32 - - vvi:100260711 611.298