Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g320 ATGGACCTCCTTCGATCCAACCTCTCTCGTGTCCGAATTCCTGAGCCCACTAATCGCATCTACAAGCAAGAATGCTGCGTTTCGTTTGCTACTCCGAAATCCGAAGGTGGATTGTTCATTGACATGAGTACGTTTCTTGCGTTTGGGAAGGACTGTGTGGACTGGAACTATGAGAAGACTGGAAATCCTGTTTATTTGCATATAAAGCAGACCAAGAAATTAGTTCCTGAAGATCGGCCTTTGAAGAAACCGACACTTTTGGCTATAGGTGTTGACGGGGGATTTGACAATAATGAACCTGAATATGAAGAAGCTCATAATATAGTCATATTGCCTAGTTACGTATCTCTTCCATTTCCATCTGTGGAGTTGCCGGAGAAGGTAAGGTTGGCAGTTGATGCCATCTTAATGGCTGAGGGTGCTGAGAGAAAAGAGCAACTTGCCTTGTGGACAGCTGATAAGAAGGAAATCAGTGCTTATGCCATGAGTCTGCAGCAGATTGACAATGGTGTCATTATTCCTCGATCAGGGTGGAAATGTTCCAAGTGTGATAAAACTGAGAATCTTTGGTTAAATTTGACTGATGGAATGATCCTTTGTGGGAGGAAAAATTGGGATGGAACTGGTGGCAACAACCATGCCATTGAGCATTACAAGGAGACAGGCTACCCTCTTGCTGTGAAGCTTGGTACGATAACTGCTGATCTGGAAGGAGCAGATGTTTTCTCTTATCCGGAGGATGATAGTGTTTTGGACCCCCTTCTAGCACAGCATTTGGCATTTTTTGGTATTGATTTTTCATCATTACAGAAGACTGAAATGACTACTGCTGAAAGGGAACTTGACCAGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGTTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCATTCACGATATTACTTGAGCCAAAGTTTGAAAGCAGCTTTTGAGACTGCTCCTGCTGATCCAACTGTAGATCTGAACATGCAATTGACAAAATTGGCTCATGGTATGCTATCTGGTAAATACTCATTTCCAGCATCAGAGAAAATTGATATTGCAAATGCTGCAGCCCCCATGTCAAGTTCTAAACAAGAAGGCATACCCCCTCGTATGTTCAAGGCAGTTATTGCTGCCAGCCATCCTGAATTTTCTAGTATGAGACAGCAGGATGCCTTAGAATTCTTTCTGCATTTGCTTGACCAAGTTGAACGAGTTAATGCTGGGCACCCTGAATTGGATCCCTCAAGGAGCTTCAAGTTTGGTATTGAGGAGCGACTTTTTTGTCCATCCGGAAAGGTTGCTTATAATAGAAGGGGGGATTATATTCTTTCTCTAAATATTCCACTGCATGAAGCTACTAATAAAGATCAGCTAGAAGCCTTTAACAAACTGAAGGCAGAAAAGAAAGCAGAGGGGAAAGAAGTATCTGGTGATGAAATCGTTCGTCCAAGGGTGCCTCTTGAAGCTTGCCTAGCAAGCTTTTCAGCTCCAGAGGAGGTTCATGGTTTTTACAGCACTGCCTTGAAGACTAAAACAACCGCAGTCAAGACTGCTGGTCTAACTTCATTTCCTGATTATTTGGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTTGATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAGGGGCATTCAGCCTGGGGAAGAGCTATTACCAGAGGCTGTTGATGAGGGTAAGGTGGAGTCAGAAAAGCTCTTGGCCAATGAGGAGATAGTTGCTCAACTTGTGTCAATGGGATTTAACCATCTTCATTGCCAGAAAGCTGCTATTAACACGTCTAATGCTGGAGTGGAAGAGGCGATGAATTGGTTGCTATCACACATGGATGATCCAGATATAGATTTTCCCATTTCTCAAGAGGCAGAAAATGCTGAGGCCTTGTCATTTGTGGACCAATCAAAAGTTGATACTCTGATTTCATTTGGTTTTCAGGAAGACATTTCTCGGAGGGCATTGAGAGCATCGGGTGGTGATATTGAGAAAGCAACTGATTGGATATTTAGCAATCCTGATGCTGCTAGTTCATCAGATATGGATGCTACAACAAGCAGTACTCCTACTGCTGATGCTGGATTGCCTGATGGAGGAGGAAGATACCGACTTATTGGGCTAGTGAGCCACATTGGAACCTCAACCCAGTGTGGTCACTATGTTGCTCATATATACAAGGATGGAAGGTGGGTTATTTTCAACGATGACAAGGTTGGGGCTTCTATTAATCCCCCCAAGGATATGGGATATTTATATTTCTTTGAGAGACTGAGCAGTTGA 2427 43.06 MDLLRSNLSRVRIPEPTNRIYKQECCVSFATPKSEGGLFIDMSTFLAFGKDCVDWNYEKTGNPVYLHIKQTKKLVPEDRPLKKPTLLAIGVDGGFDNNEPEYEEAHNIVILPSYVSLPFPSVELPEKVRLAVDAILMAEGAERKEQLALWTADKKEISAYAMSLQQIDNGVIIPRSGWKCSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAIEHYKETGYPLAVKLGTITADLEGADVFSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPLFGPGYTGLVNLGNSCYLASTMQVVFSTQSFHSRYYLSQSLKAAFETAPADPTVDLNMQLTKLAHGMLSGKYSFPASEKIDIANAAAPMSSSKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHLLDQVERVNAGHPELDPSRSFKFGIEERLFCPSGKVAYNRRGDYILSLNIPLHEATNKDQLEAFNKLKAEKKAEGKEVSGDEIVRPRVPLEACLASFSAPEEVHGFYSTALKTKTTAVKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDISHMRSRGIQPGEELLPEAVDEGKVESEKLLANEEIVAQLVSMGFNHLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDFPISQEAENAEALSFVDQSKVDTLISFGFQEDISRRALRASGGDIEKATDWIFSNPDAASSSDMDATTSSTPTADAGLPDGGGRYRLIGLVSHIGTSTQCGHYVAHIYKDGRWVIFNDDKVGASINPPKDMGYLYFFERLSS* 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4110587 4155161 - Vvi19g320 Vvi19g320 781819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g320 808 Pfam Ubiquitin carboxyl-terminal hydrolase 308 803 IPR001394 GO:0004843|GO:0016579
Vvi19g320 808 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 751 769 IPR018200 GO:0004843|GO:0006511
Vvi19g320 808 SMART Zf_UBP_1 179 234 IPR001607 GO:0008270
Vvi19g320 808 Gene3D - 628 662 - -
Vvi19g320 808 ProSiteProfiles Zinc finger UBP-type profile. 156 266 IPR001607 GO:0008270
Vvi19g320 808 Gene3D Cysteine proteinases 301 627 - -
Vvi19g320 808 Pfam Zn-finger in ubiquitin-hydrolases and other protein 180 253 IPR001607 GO:0008270
Vvi19g320 808 CDD UBA1_atUBP14 620 664 - -
Vvi19g320 808 Pfam UBA/TS-N domain 683 718 IPR015940 -
Vvi19g320 808 Pfam UBA/TS-N domain 620 656 IPR015940 -
Vvi19g320 808 PIRSF UBP 3 807 IPR016652 GO:0004843|GO:0016579
Vvi19g320 808 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 808 - -
Vvi19g320 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 104 IPR013083 -
Vvi19g320 808 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 618 659 IPR015940 -
Vvi19g320 808 SUPERFAMILY RING/U-box 159 266 - -
Vvi19g320 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 253 IPR013083 -
Vvi19g320 808 SUPERFAMILY UBA-like 672 724 IPR009060 GO:0005515
Vvi19g320 808 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 806 IPR028889 -
Vvi19g320 808 Gene3D - 678 739 - -
Vvi19g320 808 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 681 721 IPR015940 -
Vvi19g320 808 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Vvi19g320 808 CDD UBA2_atUBP14 685 722 - -
Vvi19g320 808 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 808 - -
Vvi19g320 808 CDD Peptidase_C19B 309 804 - -
Vvi19g320 808 SUPERFAMILY Cysteine proteinases 304 806 IPR038765 -
Vvi19g320 808 Pfam Variant UBP zinc finger 11 73 IPR041432 -
Vvi19g320 808 SMART uba_6 683 720 IPR015940 -
Vvi19g320 808 SMART uba_6 620 658 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g320 K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12] - vvi:100264052 1589.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008963 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 31