Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g321 ATGGTGGAAGTGGTTGAAGACGGGGAGGAGGGGGAAGATTTGAGAGGGTTGCTGGGGGAGGAATTTAAAAGGAAGAGGTGGAGAGGCTCAACAAGGTTGTTGCTTCTGGATGAGCGGTATGCGGATAAAGGCGTGGAAGAGTTGCCCGAGGCAATTAAGGCAGTGTTAAAAGAAGATACTGGCCAAAGCATGACATCAACTTTTGAGCTTGTGAAATGCAAGCTGACCTTGTTTTATAATTACTGGCAGATGAATGAGATCTTAGAGGCCTTGCTGCCTGAAGGTATGATTGTTCCTTCAGCCTTTGAAATGGTTGGGCATATTGCACACCTGAACCTCAGAGATGAGCATCTACCATACAAGAAGCTCATTGCAAAGGTAGTTTTGGATAAAAACAAGCCAAAGATACAAACAGTTGTCAATAAGACTGATGCCATCCACAATGACTACAGAACAATGCAGCTTGAGGTTTTGGCTGGAAACCGTTCCCTTGTGACTACAGTAATTGAGAATGGAATGCGTTTTCAGGTTGATTTAGCAACAGTGTATTGGAATTCAAGGCTTGCAACTGAAAGACAAAGGCTCCTGAACTGCTTTACGCGCAATGATGTTGTTTGTGACGTCTTCTCTGGGGTTGGCCCAATAGCTATCTCAGCAGCAAAGAAAGTAAAGCGTGTGTATGCTAATGACTTAAACCCTTATGCAATTGAATACCTGGAAAGCAATAGTGTTCTCAACAAACTTGAGAGGAAGATCAAGGTATTTAACATGGATGGAAGGAGGTTCATCAATGCCATGTTTACTAGTGATAAGGCTGAGTCTATCACACAAGTTGTTATGAATTTGCCTAATGATGCTGCCGAGTTTCTAGATGCCTTCAGGGGAATATTCAGAAAGAAGTCCAGGGATAAACAACTGAAATTACCAATGATCCATGTTTATGGGTTCTCTAAAGCTCAAGATCCAGAATTTGATTTCCATCAGCGGATAAGAATTGCGCTTTCAGAGGTTGCAGTTGATGTAGAAATGCACAGGGTTCGACTGGTTGCACCAGGAAAATGGATGTTGCGGGCATCATTCATCCTCCCCAAGAGTGTGGTATTTGCAAAAGCAGTGTTATATATGTAA 1128 42.73 MVEVVEDGEEGEDLRGLLGEEFKRKRWRGSTRLLLLDERYADKGVEELPEAIKAVLKEDTGQSMTSTFELVKCKLTLFYNYWQMNEILEALLPEGMIVPSAFEMVGHIAHLNLRDEHLPYKKLIAKVVLDKNKPKIQTVVNKTDAIHNDYRTMQLEVLAGNRSLVTTVIENGMRFQVDLATVYWNSRLATERQRLLNCFTRNDVVCDVFSGVGPIAISAAKKVKRVYANDLNPYAIEYLESNSVLNKLERKIKVFNMDGRRFINAMFTSDKAESITQVVMNLPNDAAEFLDAFRGIFRKKSRDKQLKLPMIHVYGFSKAQDPEFDFHQRIRIALSEVAVDVEMHRVRLVAPGKWMLRASFILPKSVVFAKAVLYM* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4163203 4172299 + Vvi19g321 Vvi19g321 781820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g321 375 CDD AdoMet_MTases 205 262 - -
Vvi19g321 375 PANTHER TRNA METHYLTRANSFERASE 21 372 - -
Vvi19g321 375 Gene3D - 83 161 - -
Vvi19g321 375 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 2 364 IPR025792 GO:0009019|GO:0030488
Vvi19g321 375 Gene3D Vaccinia Virus protein VP39 165 362 IPR029063 -
Vvi19g321 375 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 102 364 IPR030382 -
Vvi19g321 375 PANTHER TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE 2 21 372 - -
Vvi19g321 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 98 364 IPR029063 -
Vvi19g321 375 Pfam Met-10+ like-protein 101 300 IPR030382 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g321 K15429 TRM5, TRMT5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] - vvi:100241770 720.309
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g321 . . . . . . . . . . . . . . . Cpe06g00725 . . . . . . . . Cla11g01811 Cam11g1877 Cec11g1900 Cco11g1908 Clacu11g2041 Cmu11g1846 Cre11g2251 Cone6ag0106 Cone9ag0126 . . Lsi04g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010172 2 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 29