Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g322 ATGGCAACTGGGACCTCTATCTTCCTGTATAAATACCAAATCAACTCTACTTTTCTCTCTATACAAAACCCACAGGAAGCACTGGCCACTTCATTACTTCTCATGGCTTCTACAGAACCCACCATGCCCAACCGTTCTTCAACATCGCGGGCAAGAAAGACCGCTTCAGCGCAGAAGAAGCAGCCCCAGAGAGGAATGGGTGTGGCCCAGTTGGAGAGGTTGAGGGTAGAAGAGTGGAAGAAGATGACTGGGATCACCCATCTCCAACCAATGAGTCTTCCCGGTCATTTTCGGTATCAGATTCCCTACCAGTTTGCGGAGCCGCCTCCGGCGCCGGCCAGTGGTCCGGTGCAGCCGGGGTTGGGCTCGCCGGGGTGGGTTCCAAGGTTTGGGGGTGGTGGGTTTCATGGGTTTAGTGGCGGTGGTGGGTTCAGGGTGGTGGATCCGTACAGAAATGATGGAGCTGTGGGGGCTTTAACGGAGGCCTCGAGAGAGCTCTCTTCAATGCCAAAGATGGATTGTGTTTTTGATCGCTGTGATGTCTGCTTTAAGAAGAAGAGAATGAATGCTGACAATTTAGGGTTTAGTGGAGGAAGAGAGAAGTATGCAGAGACACCACCCATCAACAGCTTTGATTTTCTGGGATTGGACATGGCCAATGACGAGAACCGAGATTTAAGCCGTAGACGATCACCCATGACTGCTACTTACGCTTGTTACAACCACAGCGAGGTGAATCATTGA 744 51.34 MATGTSIFLYKYQINSTFLSIQNPQEALATSLLLMASTEPTMPNRSSTSRARKTASAQKKQPQRGMGVAQLERLRVEEWKKMTGITHLQPMSLPGHFRYQIPYQFAEPPPAPASGPVQPGLGSPGWVPRFGGGGFHGFSGGGGFRVVDPYRNDGAVGALTEASRELSSMPKMDCVFDRCDVCFKKKRMNADNLGFSGGREKYAETPPINSFDFLGLDMANDENRDLSRRRSPMTATYACYNHSEVNH* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4181540 4182679 + Vvi19g322 Vvi19g322 781821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g322 247 MobiDBLite consensus disorder prediction 39 63 - -
Vvi19g322 247 PANTHER OS01G0212500 PROTEIN 1 223 IPR040356 GO:0003700
Vvi19g322 247 MobiDBLite consensus disorder prediction 39 67 - -
Vvi19g322 247 Pfam Plant transcription factor NOZZLE 20 214 IPR014855 GO:0003700
Vvi19g322 247 PANTHER PROTEIN SPOROCYTELESS 1 223 IPR014855 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g322 - - - vvi:100262412 444.506
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012197 1 1 0 0 1 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 2 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14418 PF08744 NOZZLE 1.30E-13 No_clan Vvi TF