Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g325 ATGCCTAATAAAAGCTTGGATGCTTTTCTGTTTGATCCAAGTAAGCATGCCCAGCTTGATTGGCCAACTCAATTCGACATCATTGAGGGCATAGCACGCGGGCTTCTCTATCTTCACCATGATTCTCGTCTTCGAGTGATCCATCGAGATTTGAAGGAGCGCAACATTCTCCTGGACGAGGATATGAATCCAAGAATTTCAGATTTTGGGATGGCAAGAATATTTGGAGGGAAGCAAACTATAGCAAACACTAACAGGGTTGTTGGAACATATGGCTATATGTCCCCTGAGTATGCAATGGAAGGGATATTTTCAGAGAAGTCTGATGTATTCAGTTTTGGAGTCCTGCTATTAGAGATTGTGAGCAGTAGGAGGAACACTAGCTTTTATCAAAATGAACACTCCCTTAGCCTCATAACATATGTAACTGAACCATTTAAGATAATGGTATGCAGCCATTTTCTTCGGAAAATAATGTTGGTTTTTGATTCAACTTCTGCAACTATTTGTCGTTTACTTGCTGTTGCAACTGGTGATACAATCTTACAAGGACAATCAGTCACAGCCTCTCAGACCATTGTATCTGCCGCATACAAGATCAGCAATTTCTTCAGTGAGAAAAATGAGAGCTATTTCAATTATTCTGTTATTAACAGCTCCATTGTAAGCAGACCAGTACTGGATGTGTCAGGGCAGATTAAGCTGGAGTCATGGCAGGAAGACAGTCATGAATGGAAGTTGATTTGGTATCAACCAAGCACGCACCGTAAGGTCTATGCTTTCTGTGGGGCTTTTGGAAGCTGTAATCCGGTTTCCCAAAACAATTGTGAATGTTTGCCAGGTTTTGAACCTCGCCATCCTGAAAGCTGGAAACTGCTAGACAGATCGGGAGGGTGTGTGAGGAAAGCAGAATTGCAGTGTGGCAATCACAGTGCTGCTAACGGAGATGAAGACTGGTTTCTTCGGGTGTCTAAAGTGAAACTTCCCATACTCCAGAAACATGCCATTTTTTTTTGTAAGTATGTACGTATATTTGTGTCCATGCTGCTAATACATGAACTTCGAATTGTTCTAATAATGAAATCTAGTGGCTACATGTCTCCTGAGTACGCATTGGAAGGCCTTTTTTCAACTAAATCTGACGTGTTTAGCTTCGGGGTGTTGCTATTAGAGATCATGAGTAGCAAGAAGAACACCGGTTTTTATCAAACCGACTCCCTTAATCTTCTTGGATGTGAATGGGATCTGTGGAGAAGCAGCAGAGCACAGGACTTGATGGATCCGGTACTGGGAAGTGTATCTTCGACAAACACCCTGTTGAGGTATATCAATGTAGGCCTTCTTTGTGTTCAAGAGAGTGCAGCTGACAGGCCCACTATGTCTGATGTTGTCTCAATGCTTGACAATGAAAGTGTAGTTTTACCTTCTCCAAAACAACCAGCCTTTTCAAATCTGAGAAGTGGGTTGGAGCTTCATTCATCTGGGAACAGGCCAGAAGTTTGTTCTGTAAATTGTGTGACACTTCCAATAATGGAAGCACGATCTTAG 1548 42.18 MPNKSLDAFLFDPSKHAQLDWPTQFDIIEGIARGLLYLHHDSRLRVIHRDLKERNILLDEDMNPRISDFGMARIFGGKQTIANTNRVVGTYGYMSPEYAMEGIFSEKSDVFSFGVLLLEIVSSRRNTSFYQNEHSLSLITYVTEPFKIMVCSHFLRKIMLVFDSTSATICRLLAVATGDTILQGQSVTASQTIVSAAYKISNFFSEKNESYFNYSVINSSIVSRPVLDVSGQIKLESWQEDSHEWKLIWYQPSTHRKVYAFCGAFGSCNPVSQNNCECLPGFEPRHPESWKLLDRSGGCVRKAELQCGNHSAANGDEDWFLRVSKVKLPILQKHAIFFCKYVRIFVSMLLIHELRIVLIMKSSGYMSPEYALEGLFSTKSDVFSFGVLLLEIMSSKKNTGFYQTDSLNLLGCEWDLWRSSRAQDLMDPVLGSVSSTNTLLRYINVGLLCVQESAADRPTMSDVVSMLDNESVVLPSPKQPAFSNLRSGLELHSSGNRPEVCSVNCVTLPIMEARS* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4224219 4232990 + Vvi19g325 Vvi19g325 781824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g325 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Vvi19g325 515 SUPERFAMILY Protein kinase-like (PK-like) 1 157 IPR011009 -
Vvi19g325 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 201 329 - -
Vvi19g325 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 360 512 - -
Vvi19g325 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 142 - -
Vvi19g325 515 Gene3D Transferase(Phosphotransferase) domain 1 352 474 - -
Vvi19g325 515 Gene3D Transferase(Phosphotransferase) domain 1 1 171 - -
Vvi19g325 515 Pfam S-locus glycoprotein domain 190 285 IPR000858 GO:0048544
Vvi19g325 515 ProSiteProfiles Protein kinase domain profile. 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g325 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 1 142 - -
Vvi19g325 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 360 512 - -
Vvi19g325 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 201 329 - -
Vvi19g325 515 Pfam Protein tyrosine and serine/threonine kinase 365 466 IPR001245 GO:0004672|GO:0006468
Vvi19g325 515 Pfam Protein tyrosine and serine/threonine kinase 2 159 IPR001245 GO:0004672|GO:0006468
Vvi19g325 515 Pfam Domain of unknown function (DUF3403) 469 514 IPR021820 GO:0004674
Vvi19g325 515 SMART serkin_6 3 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g325 515 SUPERFAMILY Protein kinase-like (PK-like) 356 493 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g325 - - - vvi:104877408 289.271
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g325 . . . . . . . . . . Cma01g01172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015146 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 14
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76420 PF07714 PK_Tyr_Ser-Thr 5.80E-26 CL0016 Vvi PK