Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g33 ATGGCATCCTTTTTGCCGGAAATTGTCCTGACTAGCTCCCCTGATGGCCCCATTATTGCGTATGATCCTTACTCAGGTGCCATCATAGCTCACTTCACTGGAAGCCGATCACCCCCGAAAGGCCTCACCCTTGCTGGAAAGGGCCTCATTGCGGCCTCCCATATCTCAGCCACCGGTGCAGGCTCAATCAACCTCTATAACTGGTGGTCTTCTGCGGTCTTCAACCACCTCCCTCTCCCTGAACCAGTGGCTCCGCTTGCTGCCACTCTTGACGGTGCATACCTCTTTGCTGGGGGACTTTCTGGCCACATTTATTCCATCTCACTGCCCTCAGGGAAGACAATTCAAACGTTTCCTGCACATTCCAAGTCTGTCTCCTGCCTTGAAATCAACGATGATGGGTCTCTCCTCATATCTGGTAGTGACGATGGCTCCATTGTAGTAGCCCCAATCTTCCAGCTTGTGGCGACCTCACCAGATGGCACATGCAAGTTCTGGAGCCTCCCCCAAGGGCTCCTGCTGCGCACGGTGGCTCTCCCGTGTCCCATGGCAGGCCTGGCAATCGACCCAACCGAGTCCCATTTCTACGCTGCAGGGTCAGATGGCTCAATCTACATTGGAGCAACAAAGTCCCCAACCCGACAACTGACCAAACGAAACCTGCAAGTGATCAAATGGCGTGAGAAGCATGGTGGGCCAGTAGTATCATTGGCAATGCTGAATCAGGGGCGGAACCTGGTGTCAGGATCGGAAGACGGGAATGTCTGGATCTGGGAGGTGGAGAAAGGGCAGGTGATGACGGTGCTGGGCAATGAGATGGTGAGCATCAGCGACCTGGTGATGGCCAGGGGGGTGGCTAATAGTAGAGGGAGCAGTTCCAATCTGGGAATAAACATGGAAGAATGGAGGGAGAAGTCAGGATTAGCAGCAAGGGAGCTTAGCAGGCCAGTGAGGAAGATGGAAGAAATGAAAGAGAAGCTGGGGGTGGCAGTGAAGGACAGGAGTAGAGCCATTGATATACTTGAATCAGCCATTGGAGCATATGAAAGGCTGTTGGAACTCATTCTCAAGGAAGCCAAGGGAGGCACTGGCAACAAGAGTGGAGGAAAAGAGAAAGAAAGTATGTGA 1128 53.1 MASFLPEIVLTSSPDGPIIAYDPYSGAIIAHFTGSRSPPKGLTLAGKGLIAASHISATGAGSINLYNWWSSAVFNHLPLPEPVAPLAATLDGAYLFAGGLSGHIYSISLPSGKTIQTFPAHSKSVSCLEINDDGSLLISGSDDGSIVVAPIFQLVATSPDGTCKFWSLPQGLLLRTVALPCPMAGLAIDPTESHFYAAGSDGSIYIGATKSPTRQLTKRNLQVIKWREKHGGPVVSLAMLNQGRNLVSGSEDGNVWIWEVEKGQVMTVLGNEMVSISDLVMARGVANSRGSSSNLGINMEEWREKSGLAARELSRPVRKMEEMKEKLGVAVKDRSRAIDILESAIGAYERLLELILKEAKGGTGNKSGGKEKESM* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 371901 374095 - Vvi19g33 Vvi19g33 781532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g33 375 PANTHER OS09G0477800 PROTEIN 155 368 - -
Vvi19g33 375 PANTHER OS09G0477800 PROTEIN 1 156 - -
Vvi19g33 375 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 8 264 IPR011047 -
Vvi19g33 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 148 IPR001680 GO:0005515
Vvi19g33 375 ProSitePatterns Trp-Asp (WD) repeats signature. 246 260 IPR019775 -
Vvi19g33 375 PANTHER WD-REPEAT PROTEIN 18 155 368 IPR045227 -
Vvi19g33 375 PANTHER WD-REPEAT PROTEIN 18 1 156 IPR045227 -
Vvi19g33 375 SMART WD40_4 220 259 IPR001680 GO:0005515
Vvi19g33 375 SMART WD40_4 170 208 IPR001680 GO:0005515
Vvi19g33 375 SMART WD40_4 111 150 IPR001680 GO:0005515
Vvi19g33 375 Gene3D - 6 148 IPR015943 GO:0005515
Vvi19g33 375 Pfam WD domain, G-beta repeat 230 258 IPR001680 GO:0005515
Vvi19g33 375 Pfam WD domain, G-beta repeat 112 147 IPR001680 GO:0005515
Vvi19g33 375 Gene3D - 152 280 IPR015943 GO:0005515
Vvi19g33 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Vvi19g33 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 264 - -
Vvi19g33 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g33 K14829 IPI3; pre-rRNA-processing protein IPI3 - vvi:100265919 726.857
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013793 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 25