Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g330 ATGGAGTGCGAATCAATTTGCCTGAATCGCTGCTCTTGCTCTGCTTATGCTTATGAGGGAGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGAAAGTAATGCTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAAGCAGCAAGTGGAAGGTATGGCTAATTATTACACTGGCCATATCTTTAACTTCAGCCTTTGTCATTTATGGGATATGGGGAAGGTTCCGAAGAAAAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTATGAACTTGGCGAGACAAATAGACTTTGGAGGGGCGAGAAGAAGGAAGTTGATTTGCCCATGTTCAGTTTTGCGAGTGTATCTGCTTCTACAAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTTACAAAGAGGATATGAGGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAAAGTTTTGGGATACTGCATCGAGCGGGATGAGAAGATATTGATTTATGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCTGCAAAACGTGGGATTCTGAATTGGGAGATGCGAGTTCGCATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTCCATCAGTACTCCAGATTGAGAGTTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAAGACATGAACCCAAAAATATCAGATTTTGGAATGGCAAGAATTTTTGGAGGAAATGAATCAAAAGCAACAAAACATATAGTTGGGACTTATGGCTACATGTCCCCCGAGTATGTTTTGCGAGGTCTCTTTTCAACTAAATCTGATGTTTTTAGCTTCGGGGTCTTGTTACTAGAGATTCTAAGTGGCAAGAAGATTACTGAATTTTATCATAGTGGCTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAAACAACAAAGGACAGGAGTTGATTGATCCAGTATTGAATGAGATATCTTTGAGACATATTATGTTAAGGTACATCAATGTAGCCCTTCTTTGTGTTCAAGAAAGTGCAGATGATAGGCCCACCATGTTCGATGTTGTCTCCATGCTTGTCAAGGAAAATGTACTTTTATCTTCTCCAAATGAGCCAGCCTTCTCAAATCTATCGAGTATGAAACCACATGCATCTCAAGATAGGCTTGAAATTTGTTCCTTAAATGATGTAACACTTTCAAGCATGGGAGCACGATAA 1374 40.03 MECESICLNRCSCSAYAYEGECRIWGGDLVNVEQLPDGESNARSFYIKLAASELNKRVSSSKWKVWLIITLAISLTSAFVIYGIWGRFRRKGEDLLVFDFGNSSEDTSYELGETNRLWRGEKKEVDLPMFSFASVSASTNNFSIENKLGEGGFGSVYKGKLQRGYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPAKRGILNWEMRVRIIEGVAQGLLYLHQYSRLRVIHRDLKASNILLDKDMNPKISDFGMARIFGGNESKATKHIVGTYGYMSPEYVLRGLFSTKSDVFSFGVLLLEILSGKKITEFYHSGSLNLLGYAWDLWKNNKGQELIDPVLNEISLRHIMLRYINVALLCVQESADDRPTMFDVVSMLVKENVLLSSPNEPAFSNLSSMKPHASQDRLEICSLNDVTLSSMGAR* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4278164 4280582 + Vvi19g330 Vvi19g330 781829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g330 457 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Vvi19g330 457 Gene3D Phosphorylase Kinase; domain 1 118 217 - -
Vvi19g330 457 ProSiteProfiles PAN/Apple domain profile. 1 50 IPR003609 -
Vvi19g330 457 ProSiteProfiles Protein kinase domain profile. 142 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g330 457 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 455 - -
Vvi19g330 457 SUPERFAMILY Protein kinase-like (PK-like) 126 430 IPR011009 -
Vvi19g330 457 SMART serkin_6 142 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g330 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Vvi19g330 457 Pfam PAN-like domain 2 32 IPR003609 -
Vvi19g330 457 Pfam Protein kinase domain 143 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g330 457 CDD PAN_AP_plant 2 50 - -
Vvi19g330 457 CDD STKc_IRAK 148 413 - -
Vvi19g330 457 Gene3D Transferase(Phosphotransferase) domain 1 218 422 - -
Vvi19g330 457 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 1 455 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76421 PF00069 Pkinase 1.10E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g330 - - vvi:100246936 915.99