Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g333 ATGGCAACCTCGAGATTTTGGAGGGGAAGTTTTCGTACAAGGTATTGGACTACTGGGGTGTGGGATGGGCAGATTTTCAGCCAGATTCCTGAGTTGCGTTTCTACTACTTTTATAAGTACAATACATCCTTTAATGAGAATGAAAGCTATTTCACTTACTCTTTTCATGATCCCTCCATTCTGAGCAGAGTGGTGGTAGATGTATCTGGAGGGTGTGTGAGGAAAGAAGATTTGCAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCTTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACACTGCAAGCAAGGACTGCTATGGAGTGCGAATCAATTTGCCTGAATCGCTGCTCTTGCTCTGCTTATGCTTACGAGGGAGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGCTAGAAGTTTCTACATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAACCAGCAAGTGGAAGGTATGGTTAATTGTCACACTGGCCATATCTTTAACTTCAGTATTTGTCAATTATGGGATATGGCGAAGGTTCCGAAGAAAAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAACTGCTATGAGCTTGGCGAGACAAATAGACTTTGGAGGGACGAGAAGAAGGAAGTTGATTTGCCCATGTTCAGTTTTGCGAGTGTATCTGCTTCTACAAATAACTTCTGTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAGGATATGAGGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGTTGCAACACAAGAATCTTGTGAAAGTTTTGGGATACTGCATCGAGCGGGATGAGAAGATATTGATTTATGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCTGCAAAACGCGGGATTCTGAATTGGGAGACGCGAGTTCACATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTCCATCAGTACTCCAGATTGAGAGTTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAAGACATGAACCCTAAAATATCAGATTTTGGAATGGCAAGAATTTTTGGAGGAAATGAATCAAAAGCAACAAAACATATAGTTGGGACTTATGGCTACATGTCCCCCGAGTATGTTTTGCGAGGTCTCTTTTCAACTAAATCTGATGTTTTTAGCTTCGGGGTCTTGTTATTAGAGATTCTAAGTGGCAAGAAGATTACTGAATTTTATCATAGTGACTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAAGCAACAGAGGACAAGAGTTGATTGATCCAGTATTGAATGAGATATCTTTGAGACATATTCTGTTAAGGTACATCAATGTAGCCCTTCTTTGTGTTCAAGAAAGTGCAGATGATAGGCCCACCATGTCCGATGTTGTCTCCATGCTTGTCAAGGAAAATGTACTTTTATCTTCTCCAAATGAGCCGGCCTTCTTAAATCTATCGAGTATGAAACCACATGCATCTCAAGATAGGCTTGAAATTTGTTCCTTAAATGATTTGACTCGGTTGAACCGTTCGTGTTAA 1713 41.1 MATSRFWRGSFRTRYWTTGVWDGQIFSQIPELRFYYFYKYNTSFNENESYFTYSFHDPSILSRVVVDVSGGCVRKEDLQCVNESHANGERDQFLLVSNVRLPKYPVTLQARTAMECESICLNRCSCSAYAYEGECRIWGGDLVNVEQLPDGDSNARSFYIKLAASELNKRVSTSKWKVWLIVTLAISLTSVFVNYGIWRRFRRKGEDLLVFDFGNSSEDTNCYELGETNRLWRDEKKEVDLPMFSFASVSASTNNFCIENKLGEGGFGSVYKGKSQRGYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPAKRGILNWETRVHIIEGVAQGLLYLHQYSRLRVIHRDLKASNILLDKDMNPKISDFGMARIFGGNESKATKHIVGTYGYMSPEYVLRGLFSTKSDVFSFGVLLLEILSGKKITEFYHSDSLNLLGYAWDLWKSNRGQELIDPVLNEISLRHILLRYINVALLCVQESADDRPTMSDVVSMLVKENVLLSSPNEPAFLNLSSMKPHASQDRLEICSLNDLTRLNRSC* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4309212 4314290 + Vvi19g333 Vvi19g333 781832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g333 570 SUPERFAMILY Protein kinase-like (PK-like) 240 544 IPR011009 -
Vvi19g333 570 Pfam S-locus glycoprotein domain 16 73 IPR000858 GO:0048544
Vvi19g333 570 Gene3D Phosphorylase Kinase; domain 1 231 331 - -
Vvi19g333 570 Pfam PAN-like domain 88 145 IPR003609 -
Vvi19g333 570 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Vvi19g333 570 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 70 - -
Vvi19g333 570 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 71 565 - -
Vvi19g333 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Vvi19g333 570 CDD PAN_AP_plant 77 163 - -
Vvi19g333 570 SMART serkin_6 256 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g333 570 Gene3D Transferase(Phosphotransferase) domain 1 332 535 - -
Vvi19g333 570 CDD STKc_IRAK 262 527 - -
Vvi19g333 570 ProSiteProfiles PAN/Apple domain profile. 80 163 IPR003609 -
Vvi19g333 570 ProSiteProfiles Protein kinase domain profile. 256 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g333 570 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 5 70 - -
Vvi19g333 570 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 71 565 - -
Vvi19g333 570 Pfam Protein kinase domain 259 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g333 570 SMART ntp_6 88 162 IPR003609 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76423 PF00069 Pkinase 4.20E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g333 - - vvi:100246936 951.044