Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g335 ATGGTAACCTCGAGTAAGGAGGAGAGCTATATCAATTACTCTATTTATGATTCTTCAACTATAAGCAGATTGGTGCTGGATGTGTCAGGGCAGATTAAGCAAATGGCATGGCTTGAAGCCTCTCATCAATGGCATATGTTTTGGTTTCAACCAAAAACGCAATGTTTTGAACCTGCCTCCCCTAATAACTGGAACTCGGGTGACAAATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGGCAATAGTACTCATGCTAATGGGGAGAGAGACCAGTTTCATCGGGTGTCTAATGTGAGACTGCCAGAGTATCCACTAACACTCCCAACGAGTGGTGCCATGCAGTGCGAGTCAGATTGCCTAAATAACTGCTCTTGCTCTGCTTATTCTTACAACGTGAAGGAGTGTACAGTATGGGGTGGAGATCTTCTAAACTTGCAACAGCTATCAGATGACGACAGTAATGGTCGAGATTTCTATCTCAAACTTGCGGCCTCTGAGCTAAATGGGAAAGGCAATAAAATTTCTAGCAGCAAGTGGAAGGTGTGGCTAATTGTTACACTGGCCATTTCCCTAACTTCGGCCTTTGTCATTTGGGGGATATGGAGAAAGATCCGAAGAAAAGGGGAAAATTTGTTACTATTTGATTTCAGTAACAGCTCAGAAGATACCAACTATGAACTTAGTGAGGCAAATAAACTTTGGAGAGGAGAGGGTGGTTTTGGACCAGTTTACAAGGGAAAGTCACAAAAAGGATATGAGGTAGCTGTGAAAAGGCTTTCAAAAAGATCTGGACAGGGATGGGAGGAGTTAAAGAATGAAGCCATGCTTATAGCCAAGCTGCAACATAAGAATCTTGTGAAGCTGTTCGGCTGCTGCATTGAGCAAGATGAGAAGATATTGATTTATGAGTATATGCCCAACAAAAGCTTGGATTTCTTCCTATTTGATTCTGCAAATCATGGGATTTTGAATTGGGAGACACGGGTTCACATCATTGAAGGGGTTGCTCAGGGTCTTCTTTATCTACATCAGTACTCTAGATTGAGGATTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTAGATAAGGACCTGAATCCTAAAATATCAGACTTTGGAATGGCAAGAATATTTGGGAGCAACGAATCAAAAGCAACAAATCATATAGTTGGGACTTATGGCTACATGTCCCCTGAGTATGCTTTGGAAGGCCTCTTTTCGACTAAATCTGATGTCTTTAGCTTCGGGGTTTTATTACTAGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAAGCGACTCCCTCAATCTTCTCGGATATGCATGGGATCTGTGGAAAGACAGCAGGGGGCAGGAATTGATGGATCCAGTGTTGGAAGAGGCATTGCCAAGACACATTCTGTTGAAGTACATCAATATAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGACAGGCCTACGATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTTTACATTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGGTGGAACCACATATATTTCAAAACAGGCCTGAAATGTGTTCCTTAAATAGTGTGACACTTTCAATTATGGAAGCACGATAA 1644 41.91 MVTSSKEESYINYSIYDSSTISRLVLDVSGQIKQMAWLEASHQWHMFWFQPKTQCFEPASPNNWNSGDKSGGCVRKADLQCGNSTHANGERDQFHRVSNVRLPEYPLTLPTSGAMQCESDCLNNCSCSAYSYNVKECTVWGGDLLNLQQLSDDDSNGRDFYLKLAASELNGKGNKISSSKWKVWLIVTLAISLTSAFVIWGIWRKIRRKGENLLLFDFSNSSEDTNYELSEANKLWRGEGGFGPVYKGKSQKGYEVAVKRLSKRSGQGWEELKNEAMLIAKLQHKNLVKLFGCCIEQDEKILIYEYMPNKSLDFFLFDSANHGILNWETRVHIIEGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDLNPKISDFGMARIFGSNESKATNHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLLEILSGKKNTGFYQSDSLNLLGYAWDLWKDSRGQELMDPVLEEALPRHILLKYINIGLLCVQESADDRPTMSDVVSMLGNESLHLPSPKQPAFSNLRSGVEPHIFQNRPEMCSLNSVTLSIMEAR* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4321540 4325220 + Vvi19g335 Vvi19g335 781834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g335 547 Pfam Domain of unknown function (DUF3403) 502 547 IPR021820 GO:0004674
Vvi19g335 547 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 54 236 - -
Vvi19g335 547 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 233 546 - -
Vvi19g335 547 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 55 - -
Vvi19g335 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Vvi19g335 547 SMART serkin_6 229 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g335 547 SMART ntp_6 89 164 IPR003609 -
Vvi19g335 547 Gene3D Transferase(Phosphotransferase) domain 1 307 508 - -
Vvi19g335 547 Gene3D Phosphorylase Kinase; domain 1 204 306 - -
Vvi19g335 547 ProSiteProfiles PAN/Apple domain profile. 81 165 IPR003609 -
Vvi19g335 547 CDD PAN_AP_plant 78 165 - -
Vvi19g335 547 Pfam Protein tyrosine and serine/threonine kinase 238 500 IPR001245 GO:0004672|GO:0006468
Vvi19g335 547 ProSiteProfiles Protein kinase domain profile. 231 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g335 547 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 54 236 - -
Vvi19g335 547 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 2 55 - -
Vvi19g335 547 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 233 546 - -
Vvi19g335 547 SUPERFAMILY Protein kinase-like (PK-like) 238 527 IPR011009 -
Vvi19g335 547 Pfam S-locus glycoprotein domain 4 55 IPR000858 GO:0048544
Vvi19g335 547 Pfam PAN-like domain 89 146 IPR003609 -
Vvi19g335 547 CDD STKc_IRAK 238 500 - -
Vvi19g335 547 SUPERFAMILY Hairpin loop containing domain-like 91 149 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76425 PF07714 PK_Tyr_Ser-Thr 2.80E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g335 - - vvi:100256692 961.059