Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g336 ATGAAGCTTGGGTACGACAAAAGGGCTGGAAAAACATGGTCATTGGTGTCATGGAAGAGCGCAGAAGATCCCAGTCCAGGAGATTTCTCCCTGCAGGTCGACCCTAATGGAACTAGCCAGATTTTTAGCCTGCAAGGACCCAACAGGTATTGGACTACTGGGGTGTGGGATGGGCAGATTTTCACCCAGGTTCCTGAGATGCGTTTGCCCGACATGTATAAGTGCAATATATCCTTTAATGAGAATGAAATCTATTTGACTTACTCTCTTCATAATCCCTCCATTCTGAGCAGACTGGTGCTAGATGTGTCAGGCCAGATTAGGTCTCTGAATTGGCATGAAGGCACACGTGAATGGGATTTATTTTGGCTTCAACCAAAAACACAGTGTGAGGTTTATGCTTACTGTGGGCCTTTCGGAACCTGCACTCGGGATTCTGTTGAATTTTGTGAATGCTTGCCAGGTTTTGAACCTCGCTTCCCTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGCAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCTTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACACTGCAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATCGCTGCTCTTGCTCTGCTTATGCTTATAAGAGAGAGTGTAGAATATGGGCTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGGTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGGTAAGAAAAAAGACAGCAAGTGGAAGGTATGGCTAATTATTACACTGGCCATATCTTTAACTTCAGCCTTTGTCATTTATGGGATATGGGGAAGGTTCCGAAGAAAAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTATGAGCTTGACGAGACAAATAGACTTTGGAGGGGCGAGAAAAGGGAAGTTGATTTGCCCATGTTCAGTTTTGCGAGTGTATCTGCTTCTACAAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAAGATATGAAGTAGCTGTGAAAAGGCTCTCTAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAAAGTTTTGGGATATTGCATCGAGAGGGATGAGAAGATATTGATTTACGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCTACAAAACATGGGATTCTAAATTGGAAGACACGAGTTCACATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTGCATCAGTACTCCAGATTGAGGATTATTCATCGAGATTTAAAGGCTAGCAACATTCTTCTGGATAAGGATATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGGCAACGAATCAAAAGTAACAAATCATATAGTTGGGACTTATGGCTATATGTCCCCTGAGTATGCTTTGGAAGGTCTATTCTCCACTAAATCTGATGTCTTTAGCTTTGGGGTCTTGTTATTGGAGATTTTGAGTGGCAAGAAGAATACTGGATTTTACCAAACCGACTCGCTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAGATAGTAGGGGGCTGGAGTTGATGGATCCAGGGTTGGAAGAGACATTGCCAACACACATTCTGTTGAGGTACATCAATGTAGGCCTTCTTTGTGTTCAAGAAAGTGCAGATGATAGGCCTACCATGTCTGATGTTGTCTCAATGCTTGGCAATGAAAGTGTACGTTTACCTTCTCCAAAACAACCGGCATTTTCAAATCTGAGAAGTGGGGTGGAACCACATATATCCCAAAACAGGCCTGAAGTTTGTTCCTTAAATGGTGTGACACTTTCAGTTATGGAAGCACGATAA 2025 42.52 MKLGYDKRAGKTWSLVSWKSAEDPSPGDFSLQVDPNGTSQIFSLQGPNRYWTTGVWDGQIFTQVPEMRLPDMYKCNISFNENEIYLTYSLHNPSILSRLVLDVSGQIRSLNWHEGTREWDLFWLQPKTQCEVYAYCGPFGTCTRDSVEFCECLPGFEPRFPEDWNLQDRSGGCVRKADLQCVNESHANGERDQFLLVSNVRLPKYPVTLQARSAMECESICLNRCSCSAYAYKRECRIWAGDLVNVEQLPDGDSNGRSFYIKLAASELNKRGKKKDSKWKVWLIITLAISLTSAFVIYGIWGRFRRKGEDLLVFDFGNSSEDTSYELDETNRLWRGEKREVDLPMFSFASVSASTNNFSIENKLGEGGFGSVYKGKSQRRYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPTKHGILNWKTRVHIIEGVAQGLLYLHQYSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGGNESKVTNHIVGTYGYMSPEYALEGLFSTKSDVFSFGVLLLEILSGKKNTGFYQTDSLNLLGYAWDLWKDSRGLELMDPGLEETLPTHILLRYINVGLLCVQESADDRPTMSDVVSMLGNESVRLPSPKQPAFSNLRSGVEPHISQNRPEVCSLNGVTLSVMEAR* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4330087 4333933 + Vvi19g336 Vvi19g336 781835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g336 674 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Vvi19g336 674 Pfam Domain of unknown function (DUF3403) 629 674 IPR021820 GO:0004674
Vvi19g336 674 ProSiteProfiles PAN/Apple domain profile. 181 264 IPR003609 -
Vvi19g336 674 SMART serkin_6 358 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g336 674 Gene3D Transferase(Phosphotransferase) domain 1 434 636 - -
Vvi19g336 674 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 1 673 - -
Vvi19g336 674 Gene3D Phosphorylase Kinase; domain 1 334 433 - -
Vvi19g336 674 Pfam S-locus glycoprotein domain 51 159 IPR000858 GO:0048544
Vvi19g336 674 CDD STKc_IRAK 364 627 - -
Vvi19g336 674 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 673 - -
Vvi19g336 674 Pfam PAN-like domain 189 246 IPR003609 -
Vvi19g336 674 SUPERFAMILY Protein kinase-like (PK-like) 342 651 IPR011009 -
Vvi19g336 674 ProSiteProfiles Protein kinase domain profile. 358 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g336 674 Pfam Protein tyrosine and serine/threonine kinase 359 627 IPR001245 GO:0004672|GO:0006468
Vvi19g336 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vvi19g336 674 SMART ntp_6 189 263 IPR003609 -
Vvi19g336 674 CDD PAN_AP_plant 178 264 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76426 PF07714 PK_Tyr_Ser-Thr 8.40E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g336 - - vvi:100260532 1371.68