Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g338 ATGGGTAAGAGGAAGGTTCACGTCAACATTGTCGTCATTGGCCATGTCGACCATGGCAAGTTGACCACCACTGGTAATTTGATTTACAAGCTTGGAGGTATTGACAAACGTGTTATTGAGTTGTTTGAAAAAAAAGCCGCTGAAATGAATAAAAGATCATTCACGTATGCTTGGGTCTTAGATAAGCTCAAGGCTAAGCGTGAACATGGAATTACCATTGATATTGCTTTCTGGAAGTTTGGGACCACAAAGTACTACTGCACTGTTATTGAGGCTCATGGTCATTGGGATTTCATCAAGAACATGGTTACTAGCAGCTCACAGGTAGGCTGTCTTGTTCTCATTATTAATTCCACCACTGGTTGA 366 41.26 MGKRKVHVNIVVIGHVDHGKLTTTGNLIYKLGGIDKRVIELFEKKAAEMNKRSFTYAWVLDKLKAKREHGITIDIAFWKFGTTKYYCTVIEAHGHWDFIKNMVTSSSQVGCLVLIINSTTG* 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4374572 4374938 + Vvi19g338 Vvi19g338 781837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g338 121 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 1 121 - -
Vvi19g338 121 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Vvi19g338 121 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Vvi19g338 121 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Vvi19g338 121 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Vvi19g338 121 PANTHER TRANSLATION FACTOR 1 121 - -
Vvi19g338 121 Gene3D - 1 121 IPR027417 -
Vvi19g338 121 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 121 IPR000795 GO:0003924|GO:0005525
Vvi19g338 121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 121 IPR027417 -
Vvi19g338 121 Pfam Elongation factor Tu GTP binding domain 6 121 IPR000795 GO:0003924|GO:0005525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g338 K03231 - csin:114302182 203.756