Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g339 ATGAGTTGGATATCTTCCACGACAGCTGTGATGATGAATGTAATTAAAGAGAGAATGGAAGAGGAGAGACAAAATGAAGTATATATATTTTCAATTTTAAGATGCATGGTGAAGATCTCGTCTTGCACATCCATTGGCGCAAGATATTCTTCAATTGCTACCACACAGTGCTTTATGGATACAATCTTACAAGGTCAATCACTCATAACCTCTCAGACCATCATATCTGCTGGTGGTAACTTTGAATTAGGATTCTTTTCTCCTGGAAAGTCCACAAAATATTATGTGGGGATATGGTACAAGAAAATCTCAGAGCAAACCATTGTGTGGGTAGCTAACCGAGACTATCCATTCACAAATCCGTCCGTGGTTCTTACTGTCAGCACAGATGGCAACCTCGAGATTTTGGAGGGGAAGTTTTCGTACAAGGTGACAAGCATATCATCAAGCAGCAACACTAGTGCCACCCTGTTGGATTCTGGAAATCTTGTTTTGAGAAATAAGAGGTCAGATGTCTTATGGGAGAGCTTTGACTATCCATCGGACACGCTCCTGCCCGGAATGAAACTTGGATATGACAAAAGGGCTGGAAAAACATGGTCAATGGTGTCATGGAAGAGCGCAGAAGATCCCAGTCCAGGAGATTTCTCCGTGCAGGTCGACCCTAATGGAACTAGCCAGTTTTTTAGCCAGCAAGGACCCAACAGGTATTGGACTAGTGGGGTGTGGGATGGGCAGATTTTCGGCCAGGTTCCTGAGATGCGTTTCTTCTATATGTATAAGTACAATACATCCTTTAATGAGAATGAAAGCTATTTTACTTACTCTCTTAATAATCCCTCCATTCTGAGCAGAGTGGTGCTAGATGTGTCGGGCCAGATTAGGCATCTGAATTGTCAAGAAGGCACACATGAATGGGATTTATCTTGGCTTCATCCAAGAACACAGTGTTTTGAACCTCGCTTCCTTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGGAGTGTGTCAATGAAAGCCATGCTAATGGGGAGCGAGACCAGTTTCTTTTGGTGTCTAACGTGAGACTGCCCAAGTATCCAGTAACAATACAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATAGCTGCCCTTGCTCCGCTTATGCTTATGAGGGAGATGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGCTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAAGCAGCAAGTGGAAGGTATGGTTAATTGTTACACTGGCCGTATCTTTAACTTCAGTCTTTGTCAATTATGGGATATGGCGAAGGTTCCGAAGAAAAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTATGAGCTTGGCGAGACAAATAGACTTTGGAGGGGTGAGAAGAAGGAAGTTGATTTGCCCAGGTTCAGTTTTGCGAGTGCATCTGCTTCTACAAATAACTTCTCTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAGGATATGAGGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGTCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAGAGTTTTGGGATACTGCACCGAGCGGGATGAGAAGATATTGATTTATGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGGTTTGTAA 1824 42.65 MSWISSTTAVMMNVIKERMEEERQNEVYIFSILRCMVKISSCTSIGARYSSIATTQCFMDTILQGQSLITSQTIISAGGNFELGFFSPGKSTKYYVGIWYKKISEQTIVWVANRDYPFTNPSVVLTVSTDGNLEILEGKFSYKVTSISSSSNTSATLLDSGNLVLRNKRSDVLWESFDYPSDTLLPGMKLGYDKRAGKTWSMVSWKSAEDPSPGDFSVQVDPNGTSQFFSQQGPNRYWTSGVWDGQIFGQVPEMRFFYMYKYNTSFNENESYFTYSLNNPSILSRVVLDVSGQIRHLNCQEGTHEWDLSWLHPRTQCFEPRFLEDWNLQDRSGGCVRKADLECVNESHANGERDQFLLVSNVRLPKYPVTIQARSAMECESICLNSCPCSAYAYEGDECRIWGGDLVNVEQLPDGDSNARSFYIKLAASELNKRVSSSKWKVWLIVTLAVSLTSVFVNYGIWRRFRRKGEDLLVFDFGNSSEDTSYELGETNRLWRGEKKEVDLPRFSFASASASTNNFSIENKLGEGGFGSVYKGKSQRGYEVAVKRLSKRSKQGWEELKNEVMLIAKLQHKNLVRVLGYCTERDEKILIYEYMSNKSLDFFLFGL* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4401588 4404291 + Vvi19g339 Vvi19g339 781838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g339 607 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 316 606 - -
Vvi19g339 607 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 52 317 - -
Vvi19g339 607 Gene3D Phosphorylase Kinase; domain 1 495 594 - -
Vvi19g339 607 SMART ntp_6 351 426 IPR003609 -
Vvi19g339 607 Pfam Protein tyrosine and serine/threonine kinase 520 604 IPR001245 GO:0004672|GO:0006468
Vvi19g339 607 ProSiteProfiles Protein kinase domain profile. 519 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g339 607 Pfam S-locus glycoprotein domain 238 317 IPR000858 GO:0048544
Vvi19g339 607 Pfam PAN-like domain 351 409 IPR003609 -
Vvi19g339 607 SMART blect_4 59 180 IPR001480 -
Vvi19g339 607 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 52 317 - -
Vvi19g339 607 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 316 606 - -
Vvi19g339 607 SUPERFAMILY alpha-D-mannose-specific plant lectins 108 211 IPR036426 -
Vvi19g339 607 CDD B_lectin 66 180 IPR001480 -
Vvi19g339 607 ProSiteProfiles PAN/Apple domain profile. 343 427 IPR003609 -
Vvi19g339 607 SUPERFAMILY Protein kinase-like (PK-like) 501 606 IPR011009 -
Vvi19g339 607 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Vvi19g339 607 CDD PAN_AP_plant 340 427 - -
Vvi19g339 607 SUPERFAMILY Hairpin loop containing domain-like 353 410 - -
Vvi19g339 607 Gene3D - 53 177 IPR036426 -
Vvi19g339 607 Pfam D-mannose binding lectin 107 206 IPR001480 -
Vvi19g339 607 ProSiteProfiles Bulb-type lectin domain profile. 59 178 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g339 - - - vvi:100252174 1110.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g339 . . . . . . . . . . . . . . . Cpe06g00729 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00753 . . Bpe03g00818 . Bma14g00370 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015146 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 14
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76427 PF07714 PK_Tyr_Ser-Thr 3.30E-16 CL0016 Vvi PK