Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g341 ATGGGTAACATGAAAATTTCAACCAGAAGATACAATCTTACAAGGTCAATCACTCACAACCTCTCAGACCATCATATCTGCTGGTGTGGGGTGTGGAATGGGCAGATTTTCAGCCAGGTTCCTGAGATGCGCCAGGTTAGGAAACTGAATTGGCATGAAGGCACACATGAATGGGATTTATTTTGGCTTCAACCAAAAACACAGTGTGAGGTTTATGCTTACTGTGGGCCTTTCGGAACCTGCACTCGGGATTCTGTTGAATTTTGTGAATGCTTGCCAGGTTTTGAACCTCGCTTCCCTGAAGACTGGAATCTGCAAGACAGATCTGGAGGGTGTGTGAGGAAAGCAGATTTGGAGTTAACACTGCAAGCAAGGAGTGCTATGGAGTGCGAATCAATTTGCCTGAATCGCTGCTCTTGCTCTGCTTATGCTTATGAGGGAGAGTGTAGAATATGGGGTGGAGATCTTGTAAACGTGGAGCAGCTACCAGATGGTGACAGTAATGCTAGAAGTTTCTATATCAAACTTGCTGCCTCTGAGCTAAATAAGAGAGTTTCAAGCAGCAAGTGGAAGGTATGGCTAATTATTACACTGGCCATATCTTTAACTTCAGCCTTTGTCATTTATGGGATATGGGGAAAGTTCCGAAGAAAAGGGGAAGATTTGTTAGTATTTGATTTCGGTAACAGCTCAGAAGATACCAGCTGCTATGAGCTTGGCGAGACAAATAGACTTTGGAGGGGCGAGAAGAAGGAAGTTGATTTGCCCATGTTCAGTTTTGTGAGTGTATCTGCTTCTACAAATAACTTTTGTATTGAAAATAAACTAGGAGAGGGCGGTTTTGGATCTGTTTACAAGGGAAAGTCACAAAGAGGATATGAGGTAGCTGTGAAAAGGCTCTCAAAAAGATCTAAACAGGGATGGGAGGAGTTAAAAAATGAAGCCATGCTTATAGCCAAGCTGCAACACAAGAATCTTGTGAAAGTTTTGGGATACTGCATCGAGCGAGATGAGAAGATATTGATTTATGAGTATATGTCCAACAAAAGCTTGGATTTCTTCCTCTTTGATCCAGCAAAACGCGGGATTCTGAATTGGGAGACGCGAGTTCGCATCATTGAAGGGGTTGCTCAGGGACTTCTTTATCTCCATCAGTACTCCAGATTGAGAGTTATTCATCGAGATTTGAAGGCTAGCAACATTCTTCTGGATAAAGACATGAACCCTAAAATATCAGATTTTGGAATGGCAAGAATTTTTGGAGGAAATGAATCAAAAGCAACAAAACATATAGTTGGGACTTATGGCTATATGTCCCCCGAGTATGTTTTGCGAGGTCTCTTTTCAACTAAATCTGATGTTTTTAGCTTCGGGGTCTTGTTACTAGAGATTCTAAGTGGCAAGAAGATTACCGAATTTTATCATAGTGACTCACTCAATCTTCTTGGATATGCATGGGATCTGTGGAAAAACAACAGAGGACAGGAGTTGATTGATCCAGTACCGAATGAGATATCTTCGAGACATATTCTGTTAAGGTACATCAATGTAGCCCTTCTCTGTGTTCAAGAAAATGCAGATGATAGACCCACGATGTCCGATGTTGTCTCCATGCTTGGTAGGGAAAATGTACTTTTATCTTCTCCAAATGAGCCGGCATTCTCATATCTAAGGGGCGTGAAACCACATGCATCTCAAGAGAGGCCTGAAATTTGTTCCTTAAATGATGTAACACTTTCAAGCATGGGAGCACGATAA 1758 41.87 MGNMKISTRRYNLTRSITHNLSDHHICWCGVWNGQIFSQVPEMRQVRKLNWHEGTHEWDLFWLQPKTQCEVYAYCGPFGTCTRDSVEFCECLPGFEPRFPEDWNLQDRSGGCVRKADLELTLQARSAMECESICLNRCSCSAYAYEGECRIWGGDLVNVEQLPDGDSNARSFYIKLAASELNKRVSSSKWKVWLIITLAISLTSAFVIYGIWGKFRRKGEDLLVFDFGNSSEDTSCYELGETNRLWRGEKKEVDLPMFSFVSVSASTNNFCIENKLGEGGFGSVYKGKSQRGYEVAVKRLSKRSKQGWEELKNEAMLIAKLQHKNLVKVLGYCIERDEKILIYEYMSNKSLDFFLFDPAKRGILNWETRVRIIEGVAQGLLYLHQYSRLRVIHRDLKASNILLDKDMNPKISDFGMARIFGGNESKATKHIVGTYGYMSPEYVLRGLFSTKSDVFSFGVLLLEILSGKKITEFYHSDSLNLLGYAWDLWKNNRGQELIDPVPNEISSRHILLRYINVALLCVQENADDRPTMSDVVSMLGRENVLLSSPNEPAFSYLRGVKPHASQERPEICSLNDVTLSSMGAR* 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4430249 4433793 + Vvi19g341 Vvi19g341 781840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g341 585 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Vvi19g341 585 SUPERFAMILY Protein kinase-like (PK-like) 254 552 IPR011009 -
Vvi19g341 585 ProSiteProfiles Protein kinase domain profile. 270 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g341 585 Gene3D Transferase(Phosphotransferase) domain 1 346 548 - -
Vvi19g341 585 CDD PAN_AP_plant 117 177 - -
Vvi19g341 585 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 44 119 - -
Vvi19g341 585 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 119 583 - -
Vvi19g341 585 Pfam S-locus glycoprotein domain 45 98 IPR000858 GO:0048544
Vvi19g341 585 Pfam PAN-like domain 125 159 IPR003609 -
Vvi19g341 585 SMART serkin_6 270 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g341 585 ProSiteProfiles PAN/Apple domain profile. 112 177 IPR003609 -
Vvi19g341 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Vvi19g341 585 CDD STKc_IRAK 276 541 - -
Vvi19g341 585 Gene3D Phosphorylase Kinase; domain 1 246 345 - -
Vvi19g341 585 Pfam Protein kinase domain 273 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g341 585 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 119 583 - -
Vvi19g341 585 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 44 119 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76429 PF00069 Pkinase 1.20E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g341 - - vri:117909111 1045.03