Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g342 ATGTGGTCCGGGAACCTGATTGATATCAGAGAGTTAAGTACAGAAACAAATAAGGAGGACATCTATATCCGCGGGCACACTTCCGAGCCAGGGAAATCTGGGGAAATAGATACTTCATTCTTGTCACCGTCTGTTCCAGAGTCACACACTAATCAGAAGACCAAAAAAATAGTGATCATCCTTGTTATATCCAACTATTTTGGAATCCTCACCTTGGGCTTAGCAGTCTGGTTTCTATTTCTGAAGAAGAGAACAATGGGAACAGAGTTACCTTTGTTTGACTTGCCTACCGTTGCAACTGCTACTGACAACTTCTCCAACACCAATATGATTGGAGCAGGTGGCTTTGGGCCTGTGTACAAGGGCAATCTACCAGAAGGAGTAGCAGTAGCAGTGAAGAGATTGTCCAAGAATTCAGCACAGGGTGTGCAAGAGTTCAATAGTGAAGTTGCTTTGATGGCGAAACTTCAGCACAAGAATCTTGTCAGGCTTTTGGGCTGCTGCGTTCAAGGAGAAGAAAGAATATTACTCTACGAATATATGCCCAACAAAAGCTTGGATTATTTTATTTTCGGTTTGAGCTCCGTATCCTTATCTGTTTGGATTAGTTTCACTTTTTGGTCACCCATATTATGCTCAGTCGTGTTCAGCTCAATTCACACATCTAATGGCTATATGTCCCCTGAGTATGTGATTGATGGGCACTTTTCTATCAAATCAGATGTCTTTAGCTTTGGTGTTCTTTTACTAGAGATTGTGAGTGGTAAAAAAAACAGAGGGTTCTCTCATCCATATCACCACCACAACCTTCTGGGACATGCATGGCTGCTGTGGGAACAAAACAAGGCCTTGGAATTAATGGATGCATGTTTGGAAGATTCATGTGTTGCATCACAGGTATTACGATGCATACAAGTAGGTTTACTATGTGTTCAGAACCTTCCAGCAGACAGACCAGCAATGTCATCAGTGATTTTCATGTTGGGTAATGAGGGAGCAACATTGCCTCAACCTAAACATCCTGGTTTCTTCACGGAAAGAAGTTCAGTGGATACAGATACAATGTCAGGAAAGATAGAGTTACATTCAGAAAATGAAGTAACCATCTCAAAGCTAAAAGGTAGATGGAGAATTCAAACATCTGCTTAG 1149 41.6 MWSGNLIDIRELSTETNKEDIYIRGHTSEPGKSGEIDTSFLSPSVPESHTNQKTKKIVIILVISNYFGILTLGLAVWFLFLKKRTMGTELPLFDLPTVATATDNFSNTNMIGAGGFGPVYKGNLPEGVAVAVKRLSKNSAQGVQEFNSEVALMAKLQHKNLVRLLGCCVQGEERILLYEYMPNKSLDYFIFGLSSVSLSVWISFTFWSPILCSVVFSSIHTSNGYMSPEYVIDGHFSIKSDVFSFGVLLLEIVSGKKNRGFSHPYHHHNLLGHAWLLWEQNKALELMDACLEDSCVASQVLRCIQVGLLCVQNLPADRPAMSSVIFMLGNEGATLPQPKHPGFFTERSSVDTDTMSGKIELHSENEVTISKLKGRWRIQTSA* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4466857 4469190 + Vvi19g342 Vvi19g342 781841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g342 382 MobiDBLite consensus disorder prediction 24 48 - -
Vvi19g342 382 Pfam Domain of unknown function (DUF3403) 330 375 IPR021820 GO:0004674
Vvi19g342 382 SUPERFAMILY Protein kinase-like (PK-like) 89 351 IPR011009 -
Vvi19g342 382 ProSiteProfiles Protein kinase domain profile. 105 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g342 382 Pfam Protein tyrosine and serine/threonine kinase 224 325 IPR001245 GO:0004672|GO:0006468
Vvi19g342 382 Pfam Protein tyrosine and serine/threonine kinase 108 190 IPR001245 GO:0004672|GO:0006468
Vvi19g342 382 MobiDBLite consensus disorder prediction 32 48 - -
Vvi19g342 382 PANTHER KINASE 3, PUTATIVE-RELATED 1 201 - -
Vvi19g342 382 PANTHER KINASE 3, PUTATIVE-RELATED 222 352 - -
Vvi19g342 382 Gene3D Transferase(Phosphotransferase) domain 1 191 335 - -
Vvi19g342 382 Gene3D Phosphorylase Kinase; domain 1 80 180 - -
Vvi19g342 382 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 201 - -
Vvi19g342 382 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 222 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g342 - - - vvi:100255581 675.241
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g589 Vvi19g342 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00846 Bhi11g00715 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015070 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 5 12
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76430 PF07714 PK_Tyr_Ser-Thr 3.90E-08 CL0016 Vvi PK