Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g344 ATGCTCAGACAGACAGATACCATCATATCTGCAGGTATGAAGATTGGATACAACAGAAAGACCGGAGAAGTTTGGTCATTTACATCCTGGAAAAATGCAGAGGACCCAGGCCTAGGGCCTGTTTCCCTGAAAATGGATCCTGAAACACACCAATTTGTCATCATGTGGAATTCTCAAATGGTTTGGAGTAGTGGGGTTTGGAATGGGCATGCTTTCAGTTCTGTTCCTGAAATGAGATTAGACTATATTTTCAATTACAGCTACTTTGAAGACATGAGTGAGGCATACTTCACTTATTCTTTGTATGATAATTCTATTATATCTAGATTGCTTATAGATGTGTCTGGAAACATCAAGCAGCTGACGTGGCTTGATAGATCGGGCTGGAATCTGTTCTGGTCTCAACCACAAAATTTTGAATGCGATTACTACTCTTATTGTGGTTCTTTTAGCAGCTGCAATAATCAGACCACTCCTATCTGTCAATGCTTGTATGGTTTTAGACCCAACTCTGCAGGAGATTGGATGATGAATCAATTTAGAGATGGATGTGTGAGGAAAACCTCCTTGCAGTGTGATGATCTCACTTCTGTTAATAGTGAGAAAGACAAGTTCCTCAAAATGGCTAATGTGAAGTTTCCTCAGAGCCCTCAGATTTTGGAAACACAGTCTATAGAAACATGCAAAATGACTTGCTTGAACAAGTGCTCTTGCAATGCTTACGCTCATAATGGCAGCTGTTTAATGTGGGATCAAATTCTATTGAACTTGCAACAACTTTCAAAAAAGGATCCTGATGGAAGAACACTATATCTTAAACTTGCTGCATCTGAGCTCCAAAATTCCAGAGAAAGCAAAATGCCACGGTGGGTTATTGGGATGGTGGTTGTTGCTGTACTGGTGCTTCTTTTGGCCTCCTACATCTGTTACCGACAAATGAAAAGAGTCCAAGACAGAGAGGAAATGACAACAAGCCAGGATATATTACTATATGAATTTGGTATGGGTTCAAAAGCTACTGAGAATGAGCTCAATGAGGGAAATAGGGTTGGAAAAGACAAGAACAAGGATGCTTGGTTGCCATTGTTCAGCTTTGCAAGTGTATCTGCAGCAACAGAGCACTTCTCAACTGAAAATAAGCTAGGACAAGGTGGCTTTGGACCTGTTTACAAGGGTGAACTATTTAATGGACAAGAAATAGCAGTAAAGAGGCTTTCAAGGAGCTCAGGGCAAGGGCTAGAAGAACTAAAAAATGAAACAGTGCTTTTGGCTGAACTTCAACACAGGAACCTTGTTAGACTCTTAGGCTGCTGCATAGAGCAAGGTGAAAAGATATTAATCTATGAGTACATGCCCAACAAAAGCTTGGACTCGTTCCTTTTCGATCCAAACAAAAGAGGCCAGTTAGATTGGGCAAAGCGCGTCAGTATTATTGAAGGAATTGCTCAAGGGCTTCTCTATCTCCATGAGTATTCCAGATTAAGGATAATTCACAGAGATTTGAAGGCTAGTAATATCCTACTGGATAATGACATGAACCCCAAAATATCTGATTTTGGCATGGCGAGAATGTTTGGAGGAAACGAGTCATATGCAAACACAAATCGAATTGTTGGGACCTATGGTTATATGTCCCCTGAGTATGCTTTGGAAGGCCTTTTCTCCACAAAGTCTGACGTCTTTAGCTTCGGAGTCTTGATGCTGGAGATCCTGAGTGGCAAAAAGAATACAGGCTTTTATAATAGTGACACTCTTAATCTTATTGGATATGCATGGGAACTGTGGAAAAGCGATATGGCTATAAATTTGATGGATCCCATGTTGGAAGGCCAGTCCTCTCAGTATATGCTGTTAAGGTACATCAATGTGGGACTCCTTTGTGTTGAAGAAATTGCAGCTGATAGACCAACCCTGTCGGAAGTAGTCTCAATGCTTACCAATGAACTTGCCGTTCTACCTTCTCCCAAGCACCCTGCTTTCTCAACTGTAAGGAGCATGGAAAATCCACGCTCATCCATGAGCAGGCCTGAAATTTATTCAGCAAATGGTTTGAGTATTTCAGTTATGGAAGCTCGATAG 2079 41.13 MLRQTDTIISAGMKIGYNRKTGEVWSFTSWKNAEDPGLGPVSLKMDPETHQFVIMWNSQMVWSSGVWNGHAFSSVPEMRLDYIFNYSYFEDMSEAYFTYSLYDNSIISRLLIDVSGNIKQLTWLDRSGWNLFWSQPQNFECDYYSYCGSFSSCNNQTTPICQCLYGFRPNSAGDWMMNQFRDGCVRKTSLQCDDLTSVNSEKDKFLKMANVKFPQSPQILETQSIETCKMTCLNKCSCNAYAHNGSCLMWDQILLNLQQLSKKDPDGRTLYLKLAASELQNSRESKMPRWVIGMVVVAVLVLLLASYICYRQMKRVQDREEMTTSQDILLYEFGMGSKATENELNEGNRVGKDKNKDAWLPLFSFASVSAATEHFSTENKLGQGGFGPVYKGELFNGQEIAVKRLSRSSGQGLEELKNETVLLAELQHRNLVRLLGCCIEQGEKILIYEYMPNKSLDSFLFDPNKRGQLDWAKRVSIIEGIAQGLLYLHEYSRLRIIHRDLKASNILLDNDMNPKISDFGMARMFGGNESYANTNRIVGTYGYMSPEYALEGLFSTKSDVFSFGVLMLEILSGKKNTGFYNSDTLNLIGYAWELWKSDMAINLMDPMLEGQSSQYMLLRYINVGLLCVEEIAADRPTLSEVVSMLTNELAVLPSPKHPAFSTVRSMENPRSSMSRPEIYSANGLSISVMEAR* 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4497731 4501094 + Vvi19g344 Vvi19g344 781843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g344 692 CDD STKc_IRAK 381 647 - -
Vvi19g344 692 SMART ntp_6 200 274 IPR003609 -
Vvi19g344 692 ProSiteProfiles PAN/Apple domain profile. 192 275 IPR003609 -
Vvi19g344 692 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 691 - -
Vvi19g344 692 Gene3D Phosphorylase Kinase; domain 1 336 450 - -
Vvi19g344 692 Pfam Protein tyrosine and serine/threonine kinase 377 645 IPR001245 GO:0004672|GO:0006468
Vvi19g344 692 CDD PAN_AP_plant 188 275 - -
Vvi19g344 692 ProSiteProfiles Protein kinase domain profile. 375 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g344 692 Pfam PAN-like domain 199 256 IPR003609 -
Vvi19g344 692 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-7 11 691 - -
Vvi19g344 692 Pfam S-locus glycoprotein domain 62 170 IPR000858 GO:0048544
Vvi19g344 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Vvi19g344 692 Gene3D Transferase(Phosphotransferase) domain 1 451 652 - -
Vvi19g344 692 SUPERFAMILY Protein kinase-like (PK-like) 358 678 IPR011009 -
Vvi19g344 692 SMART serkin_6 375 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76432 PF07714 PK_Tyr_Ser-Thr 3.20E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g344 - - vvi:100260654 1385.16