Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g345 ATGACAAACCAGGCTTTTAAAACTTCTTTTGTATACAATGAAGATGAAGCATACTATCTGTATGAGCTTAAAGATAATTTAAGTATAACAAGACTGACGCTGAATGAACTGGGTTCAATCAATCGCTTTGTATTGAGCGAAAGTAGCACTGAGTGGGCCATAATGTATACAGTACAGAATGACCTGTGCGACAATTATGGACACTGTGGTGCTAATGGCTTTTGCAGAATAGGAAACACACCAATTTGTGAGTGCTTGGATGGCTTTGTTCCAAAGTCACAGAATGAATGGGAGTTTCTGAATTGGACCAGCGGATGCATTAGGAGCACTCCATTGGATTGCCAAAAAGGAGAAGGGTTTATAGAAGTTAAAGGTGTGAAATTGCCTGACCTGTTGGATTTTTGGGTAAACAAGAGGACGACCCTTAGGGAGTGTAGGGCTGAGTGCTTGAAGAACTGTTCTTGCACCGCTTATGCTAATTCAAATATTAGCAAAGGAGGCAGCGGCTGCTTGATGTGGTTTGGCAATTTGATTGATGTCCGTGAATTCCACGCCCAGGAGAGTGAGCAAACGGTCTATGTCAGAATGCCAGCCTCAGAACTAGAATCAAGGCGCAACTCCAGTCAAAAGAGGAAACATCTGGTGATTGTGGTGCTTGTATCCATGGCTTCTGTAGTGCTCATTTTGGGTTTGTATGCAGTTGATGGTCAATTTTCAGTGAAATCTGATGTCTTCAGTTTGGGTGTGCTTTTGTTAGAGATAGTAAGTGGCAAAAAGAACAGGGGATTTTGTCATCCAGATCACTACCACAATCTTTTGGGACATGTGTGGTTACTGTGGAATGAAAACAGAGCCTTGGAACTGATGGAGCCATGTTTGGTGGACTCATATGTTGAATCTCAAGTACTAAGATGCATTCAAGTTGGTCTACTATGCATCCAAAAACTCCCAGAAGACAGGCCATCAATGTCATCAGTGGTCTTAATGTTGGTTAATGAGGAAATAACATTGCCTCAACCCTAG 1023 42.13 MTNQAFKTSFVYNEDEAYYLYELKDNLSITRLTLNELGSINRFVLSESSTEWAIMYTVQNDLCDNYGHCGANGFCRIGNTPICECLDGFVPKSQNEWEFLNWTSGCIRSTPLDCQKGEGFIEVKGVKLPDLLDFWVNKRTTLRECRAECLKNCSCTAYANSNISKGGSGCLMWFGNLIDVREFHAQESEQTVYVRMPASELESRRNSSQKRKHLVIVVLVSMASVVLILGLYAVDGQFSVKSDVFSLGVLLLEIVSGKKNRGFCHPDHYHNLLGHVWLLWNENRALELMEPCLVDSYVESQVLRCIQVGLLCIQKLPEDRPSMSSVVLMLVNEEITLPQP* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4507988 4510361 + Vvi19g345 Vvi19g345 781844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g345 340 Pfam PAN-like domain 114 180 IPR003609 -
Vvi19g345 340 SUPERFAMILY Protein kinase-like (PK-like) 234 334 IPR011009 -
Vvi19g345 340 CDD PAN_AP_plant 110 197 - -
Vvi19g345 340 Pfam S-locus glycoprotein domain 3 93 IPR000858 GO:0048544
Vvi19g345 340 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 232 340 - -
Vvi19g345 340 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 3 202 - -
Vvi19g345 340 SMART ntp_6 115 196 IPR003609 -
Vvi19g345 340 Gene3D Transferase(Phosphotransferase) domain 1 200 336 - -
Vvi19g345 340 Gene3D Hepatocyte Growth Factor 111 197 - -
Vvi19g345 340 ProSiteProfiles PAN/Apple domain profile. 114 198 IPR003609 -
Vvi19g345 340 PANTHER - 3 202 - -
Vvi19g345 340 PANTHER - 232 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g345 - - - vvi:100265866 473.781
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g345 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00714 . . . . . . . . . . . . . . . Chy06g01737 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015070 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 5 12
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76433 PF00954 S_locus_glycop 2.00E-21 No_clan Vvi PK